Array 1 64478-65788 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNU01000010.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001385 CFSAN001385_contig0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64478 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 64539 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 64600 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 64661 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 64722 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 64783 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 64844 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC G [64865] 64906 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 64967 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT G [64988] 65029 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 65090 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 65151 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 65212 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 65273 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 65334 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 65395 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 65456 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 65517 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 65578 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 65639 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 65700 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 65761 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82410-84944 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNU01000010.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001385 CFSAN001385_contig0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82410 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 82471 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 82532 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 82593 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 82654 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 82715 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 82776 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 82837 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 82898 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 82959 29 100.0 33 ............................. CCAAAAAACATTGAGTGCTTCTTGTACGTTCAT 83021 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 83082 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 83143 29 100.0 33 ............................. CCTGGAATGGTTTAACGGTCGCAATCCAGGATA 83205 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 83266 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 83327 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 83388 29 100.0 33 ............................. CGATACAGGAAATCAAGGAGAAGCGGGTGCGTA 83450 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 83511 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 83572 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 83633 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 83694 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 83755 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 83816 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 83877 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 83938 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 83999 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 84060 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 84121 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 84182 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 84243 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 84304 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 84365 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 84426 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 84487 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 84548 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 84609 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 84670 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 84731 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 84792 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 84854 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 84915 29 96.6 0 ............T................ | A [84942] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //