Array 1 34801-33610 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOJP01000021.1 Pseudomonas otitidis strain DSM 17224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34800 29 100.0 32 ............................. GCCCCGCAGAGGTCGCAGAAACAGCGGTCGTG 34739 29 100.0 32 ............................. TTACCCGAATTCGATTTTTGGTCACGTGACGC 34678 29 100.0 32 ............................. TACGTCAATGAAGACGGTTCGCAGATGAACGA 34617 29 100.0 32 ............................. AACGGCAAGAGCATCATCGCCGGCGGTACCGG 34556 29 100.0 32 ............................. CGCTCTTCGATCACCGTCCAGCCCCAGCCGAT 34495 29 100.0 32 ............................. TCCGCTGTTCGGAGCGAGTCCGAAGGTGGCGA 34434 29 100.0 32 ............................. GCTGAGGTCCTGCTGATGAACCTGTGCCAGCG 34373 29 100.0 32 ............................. TACCGGCCGTTCGAATAGAGGTTCTCCGGCAG 34312 29 100.0 32 ............................. GTGATCCACCAGCTGGAGGCGGCGCACAAGAT 34251 29 100.0 32 ............................. CTCGCTGGCCTCTGAATTCTCCGGCCCCGAGT 34190 29 100.0 32 ............................. CGCTTTGCCGAGCAGCTGGAGCGCATGCCGAT 34129 29 96.6 32 ..............C.............. ATTCAGCACAAGCGCCGCAACGTGATGATGTG 34068 29 96.6 33 ..............C.............. GACGCTGGCCAGCAGGCCATGCGCAACGTCCAG 34006 29 96.6 32 ..............C.............. TTCTACCGGGTCATGCTGCCGCAGCGTAACGA 33945 29 100.0 32 ............................. CACCCTGCAGGCGTCGAGCAGTCGGCGACCCT 33884 29 100.0 32 ............................. GCCCGCAGGCGCGGGCAAGGGCGCCGATCTGA 33823 29 100.0 32 ............................. AAATTGAGGGAGGCGCGAAAGCTTACCCAGCG 33762 29 100.0 33 ............................. CACTACGGCACGCAGGATGGCCAGGTGGTGGAA G [33745] 33699 29 93.1 32 .........................T..A GAAGAGCCAACCAGACTGCCGAAGGTCGAAGC 33638 29 75.9 0 C..........A.AC..........G.GT | ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.9 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGGTCGCATCATCCCGCTGATCGAAGAGGTGCTCGCCGCCGGCGGTATCCACCCGCCCGAGGCGCCGCCGGAGTCCGTACCGCCGGCCATCCCCAACCCCGACAGCCCCGGCGATGCCGGGCACCGGAGCCGCTGATGGCCTTTCTCACCGTGGTCACCGAGAACGTCCCGCCACGCCTGCGCGGGCGCCTGGCCATCTGGCTGCTGGAGGTGCGCGCGGGGGTGTACATCGGCGACGTCTCGCGGCGCACCCGGGAAATGATCTGGCAGCAGCTCGAAGCCGGGTACGAGGACGGCAGTGTGGTCATGGCCTGGGCCAGCCAGAACGAGTCCGGCTACGACTTCCAGACCCTCGGCAGCAACCGCCGCGAACCGGTGGACCATGACGGCCTGCGGCTGGTGGCCTTCCTGCCGCCGACCACCGCGGATTCCATGCCCTAATAATCGGTAGATTTTCAGGAGGTGATTTTTATCTTTGAGAACAAGGGGTTGCAGTTGGA # Right flank : CGCGACCCTACCGCCGCTGCCAGATCTTCCGGCCGCCCTGGTCTTCGGTCACCAGGTAGGGGTCGCTGAAGCGGTAGCGGGTGGCGGGCTGGTAGTCGGTGCCGCCGTCGGGGCGGACCAGGAGGATGCCGTCGGCGGTCTGCCATTGGCCGGCGTACTGGAGGGTGCCGTCGCTGTCGTAGCTCCAGTCGGAGCCGCCGCCGACGGAGCGGCTCCATTGCTCGACGCGGCCGTCGGGGGCGAGGTGCAGGGTGAGCACGGTGTTGAAGGAGGCGAAGCTGGCGCCACCGCTGTTGATGATGTCTTCGTGGACCCAGGTGCCGACCAGTGCCGGGTCCAGGGTGCCGGCGCTGGTGCGGGTGGCGCCCGTGGCAGTTGAGGGGCTGCGCTGGAACAGCGCCTGGCGCTCCAGTACCTGGCCGCTGACGGGGTCGCGGGCGGCGAGGCGGGCGTTGAGCTGGTCGTTGCCGTAGGTGGCGGCGAGGGTGGCGATCACCTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45246-44912 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOJP01000021.1 Pseudomonas otitidis strain DSM 17224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45245 29 100.0 32 ............................. ATGCTCTGCAGCACGGCTTTCAGCAGGGTCTC 45184 29 100.0 32 ............................. CCGTGGATACCGGACGCGAGTTTGAAGAAGCT 45123 29 100.0 32 ............................. GCGGCTATCGCCCGCCGTGGCATCGAGCTCCA 45062 29 100.0 32 ............................. TTCCCGGCCAAGCTGGAGCGTGACAGGCAGCG 45001 29 96.6 32 ................A............ CGCCAGGGCCTCGATTGCGGCGCGCAGGGTGA 44940 29 86.2 0 ............T.C.......C.....C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GAAGAGACCATCCTCCCGCGCCTGTACCGCGAAGCCCCGGTCAACTCCATCTGGGAAGGCTCCGGCAACGTCCAGTGCCTGGACGTCCTCCGCGCTCTGTCCAAGGAGCCCGGCGTGCTCGACGCCCTGTTCAGCGAACTGGGCGACGGCCACGGCGACGCCCGCCTCGCCGCGCAGATCAACAACCTCAAGGCCGCCTTCCACGACACCGCCGACATCCAGTACCGCGCCCGCCAGCTCACCGAAGACGTCGCCGTCGCCCTCCAGGCCAAGCTCCTGCTGGAGGCCGGCAACGCCACCGTCTCCGACGCCTTCATCGCCAGCCGCCTGGGCGGCAGCGGCCGGGTCTACGGCACCCTCCCGCGCGGCATCGACGTCGAAGCCCTGGTCGCCCGCAGCACCCCGCACCTGGCCTGACGCCACCCTGGCAACAAGGGAAAACAGCCGGTAGATTTTCCGCTGCCGGCTTTTCCCTCTGGGATCAGCGGGTTACGGGAAGA # Right flank : ACCCCAAACCGGAATGGCCAGCCCCCACTGCGGGGCCTGCGTAGGATGGGGTGAGCTTGGCGAACCCCATCACCCGGCCGCGCCCCGGCCCTAGGCCGCCCGCTCCGCCAGCCGGCGCTGGCCGGTCAGCGCCGTGGCCACGAACAGCGCCGCCGCCAGGCTCAGCGCCAGGGGCAGGCCGTGGGGGCCGGTGCCCATCAGCGCACCGCTCAGCAGCGGCCCCACCAGGCTGCCGATGCCCCACAACATGCCCACGCAAGCGTTGGCGGTGACCAGATCCTGCCCGCTGAAGCGCTCGCCGATGCGCACCAGCGCCAGGGTGTAGACGCCCCCCGCCACCGCCCCCAGCAACACCAGCGCCGGCCACAGCAGCGTGGGCCGGGTGATCAGCCAGGGCAGCGCCATGCCGATGCCCAGCGCCGCCACCCCGCAGACCAGGTGCAGGCGGCCGCGCTCGGTGCGGTCCGACAGCCAGCCCAGCGGCACCTGGCAGACCATGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //