Array 1 888898-894281 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070622.1 Mycoplasma gallisepticum strain KUVMG001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 888898 36 100.0 30 .................................... ATTTCTCTAAACAGTTGGCGATCCATCACT 888964 36 100.0 30 .................................... GCAACGTTAATAATCTTATTATTATTTACA 889030 36 100.0 30 .................................... AATAGTACCATCTTTTGTTGTCTCTAAATC 889096 36 100.0 30 .................................... AATAAAAATACTATGTTATACTTATACTGT 889162 36 100.0 30 .................................... TTGTAATTGAACAGACATACCTAGACACAT 889228 36 100.0 30 .................................... TATTGCATCTACGTCAATTTGTTCATTTTT 889294 36 100.0 30 .................................... TAAAAAAGATTGAATTCTTCTTCTCGATCA 889360 36 100.0 30 .................................... ACTGTATTAGCTCAGAATCAAGCTTGACCC 889426 36 100.0 30 .................................... TTTATATAAAAACGTAATAATTTAGCGTTG 889492 36 100.0 30 .................................... AAAATAGTTTTAACAGTAACTAAGTTTATT 889558 36 100.0 30 .................................... GTTGAGAGGGAGTATCGAAACTTTATGGTT 889624 36 100.0 30 .................................... ATTATATTGATTGACAAAACCAAAACTTAT 889690 36 100.0 30 .................................... CATAATGATATTTATTTGCATCAACTTGCT 889756 36 100.0 30 .................................... TAATGAAGAAGTTGCAAAAGGTGAAGGTTG 889822 36 100.0 30 .................................... AATTCTACATTTAATACCATTTATGATAAC 889888 36 100.0 30 .................................... ACAGCAAGCGCTTATCTTGGTTGATCAAGC 889954 36 100.0 30 .................................... ATTCCCATTATTTCAACCGCACTAGTAGCG 890020 36 100.0 30 .................................... TTAATATTTTTGTATTTAAATCAAATTTTT 890086 36 100.0 30 .................................... AACGATGTTCTTGTTGTTTAGGTGGGCAGA 890152 36 100.0 30 .................................... TAGTTTGTAATTAACTTCTCTATTTTCTTC 890218 36 100.0 30 .................................... ATTAATTCTTCTGACTTTCAAACTCATCGT 890284 36 100.0 30 .................................... TTAAAAGATTTAAAAGTAATTTCTCACCAC 890350 36 100.0 30 .................................... ACTATTAAACGTTAAAGACATTAACAACAT 890416 36 100.0 30 .................................... TGGGTTTACAAGCTTTAATCCTAACATAAA 890482 36 100.0 30 .................................... CTGAAAACCATAAAACCGACTTAACTTGAC 890548 36 100.0 30 .................................... TATATTCCCTCATATGAATTATATCACATA 890614 36 100.0 30 .................................... TTAAAAGATTTAAAAGTAATTTCTCACCAC 890680 36 100.0 30 .................................... ACTATTAAACGTTAAAGACATTAACAACAT 890746 36 100.0 30 .................................... TGGGTTTACAAGCTTTAATCCTAACATAAA 890812 36 100.0 30 .................................... CTGAAAACCATAAAACCGACTTAACTTGAC 890878 36 100.0 32 .................................... CCCCCCTATAACAATAGTTAAATCAAATAACG 890946 36 100.0 30 .................................... ATTCACTACATTATCACAAACCTAACGTTG 891012 36 100.0 30 .................................... GTAGTTGTTATAACTGTCTGTATTATAGTG 891078 36 100.0 30 .................................... ATAATTAAATTTGTCTGTAAATATAAAGAC 891144 36 100.0 30 .................................... AAGTTACCACACAACAACATCACCTACCTC 891210 36 100.0 30 .................................... ATAAAGTCATTAACTCTATCATTATTTTGT 891276 36 100.0 30 .................................... GTCTATACAACTTAGTTTATGATGTTTATG 891342 36 100.0 30 .................................... TTTAATGATGGTTATGATGTTTTTATTCGT 891408 36 100.0 30 .................................... TAAACCCCAAAAACAGCTTCTAATTTTACC 891474 36 100.0 30 .................................... TAAAAACAAAAAATGAGCTGACTTTGAACA 891540 36 100.0 30 .................................... ATCTGGTTTTATAAAATATCTAAGCCCTTT 891606 36 100.0 30 .................................... TAAAATTTAATTTTGAAGAAAATAGATTAG 891672 36 100.0 30 .................................... ACCACCGCCATAAATTAAATCTGGTTTAAT 891738 36 100.0 30 .................................... CTGTAACAGAAATTACAAAAGCGCAAACAC 891804 36 100.0 30 .................................... TAAAAACAAAAAATGAGCTGACTTTGAACA 891870 36 100.0 30 .................................... CTTTTTTAACGTTTTGAGATAATTCATCGT 891936 36 100.0 30 .................................... TCTACAAATTGTCAACATATACCGACCCAA 892002 36 100.0 30 .................................... ATCACAACACGATTGATCATGGTATAATCG 892068 36 100.0 30 .................................... AAATTTTTTAATTTTGTCAATAATTTTTGT 892134 36 100.0 30 .................................... AAACGACAAAGTGAGTCTCTACTTGATGAA 892200 36 100.0 30 .................................... CTATTTTTATATTAATTATAAAACATATTT 892266 36 100.0 30 .................................... AACCTTCTTTTTTCGTCGTTTAATAAATAT 892332 36 100.0 30 .................................... TTCGAACTTTCGAATTAAGTCGTTTTGGTT 892398 36 100.0 30 .................................... GTTGTCATGATAGCCTTTAACGCCTATATA 892464 36 100.0 30 .................................... CTATTAGTCTAAGACATTTAGTCGCATCAT 892530 36 100.0 30 .................................... ACCAAAAACAAAGTCGTTTTCACGTTTTAT 892596 36 100.0 30 .................................... AAATTATTGACAAAATCAAAATACTTTGTT 892662 36 100.0 30 .................................... CTTAATAATGCCTACAAAATATTTATATTC 892728 36 100.0 30 .................................... AATGAGTTGATCAGTGATCGCTGATTCTGA 892794 36 100.0 30 .................................... TTTAAAAGTTGAAAATTATACGATTAAACA 892860 36 100.0 30 .................................... ATTTTCTTCTCCTTGATTATTCTCTAACAC 892926 36 100.0 30 .................................... TTTGGATAAATTCGAATAATATCTTTATCA 892992 36 100.0 30 .................................... TTTAAAAGTTAAAAACGTTGTCGTTGATGG 893058 36 100.0 30 .................................... TGATCACCTTCAACTTTAAACCCAAAATTT 893124 36 100.0 30 .................................... TTAGTTTAAATAGTGCAACTGACCCACTTT 893190 36 100.0 30 .................................... TTAAATTATCACCATCATAAGCATCTATGT 893256 36 100.0 30 .................................... GGGGTCGTGATAGCCTTTAATGCCAAGATA 893322 36 100.0 30 .................................... CAAAAATTAAATTTAATGTTCTTAATGTCT 893388 36 100.0 30 .................................... AAATTTAAAATTACCAGTTGAATTTTCAAA 893454 36 100.0 30 .................................... TATTGATCTCTTCCATTAAATCGTTATTAT 893520 36 100.0 30 .................................... TTTGTTATGTAATTGTAATAACTGTTCGTA 893586 36 100.0 30 .................................... AAAGTTAGTTTTTGCGACGGTCAAAACTTT 893652 36 100.0 30 .................................... TTGATGTAGCTATTTATGTCATATAAATAA 893718 36 100.0 30 .................................... TTAAAGTAATAACAGATCAGATTGACATAT 893784 36 100.0 30 .................................... TCTTAATCAATGAACCCGCACCATATTTTA 893850 36 100.0 30 .................................... GTAGTTCGTTAAATTTACCAACCGGAATTA 893916 36 100.0 30 .................................... AAATGAACGTTTAACATTAATAATATTGTT 893982 36 100.0 30 .................................... AATCAAAACATCGACGTTAACGCTATCCGT 894048 36 100.0 30 .................................... TTGAACAAATAACACAAACCCAGCTTTATA 894114 36 100.0 30 .................................... TGTCGCTATACCCAAACCCAAGTTTTTCCA 894180 36 100.0 30 .................................... TTAACTTTAGTTTTTCTGAATTTAGTCTAT 894246 36 97.2 0 .............G...................... | ========== ====== ====== ====== ==================================== ================================ ================== 82 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGTCGTGATATTATTTCGTTAGATACTTCTTACTCTAAGATTCTGAAATCAATAATAAAGATTTCAGAAGACTATATAGATCATGAATTTATCTATTCATATTTAGAATTATTACATTGATCAAAAGAAGTTAAAACAGTTATTCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTAAGTAACTTAACTCAAACTACTAATTTAATTATTATGAAGAATGATATTATCTATGATCTTGAAAAAAATTTTGAGTTTTTTGAGACATACTGTTTAATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTTAAAGTTATGGTTGATGATGAGTTTAAGACCACAATGTCTTTTCAACAGCTAGAAATAGTAAAAAAGGAATTAAAAAAGCATATTAATTAGCTTATTTTATTTGACAATGAG # Right flank : CAAAAACAAGTATTTTTTATAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTATTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAAGATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTTTCTTGTAAATCTTTGATGGCATAAGATAAGTTGGCAACCTCAATTAAATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACTGTGTTGTTAATACTTACTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //