Array 1 80018-78036 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXV01000002.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2839 NODE_2_length_128071_cov_4.75751, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80017 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 79956 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 79895 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 79834 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 79773 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 79712 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 79651 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 79590 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 79529 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 79468 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 79407 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 79346 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 79285 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 79224 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 79163 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 79102 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 79041 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 78980 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 78919 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 78858 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 78797 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 78736 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 78675 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 78614 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 78553 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 78492 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 78431 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 78370 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 78309 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 78248 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 78187 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 78126 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 78065 29 96.6 0 A............................ | A [78038] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 97954-96276 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXV01000002.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2839 NODE_2_length_128071_cov_4.75751, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97953 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 97892 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 97831 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 97770 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 97709 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 97648 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 97587 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 97526 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 97465 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 97404 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 97343 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 97282 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 97221 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 97159 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 97098 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 97037 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 96976 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 96915 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 96853 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 96792 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 96731 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 96669 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 96608 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 96547 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 96486 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 96425 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 96364 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 96303 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //