Array 1 142028-142924 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG770216.1 Veillonella sp. 6_1_27 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 142028 35 100.0 38 ................................... AGGCTAATGGCGTTCCTCAGAAGCCTAAGGGACAAAAA 142101 35 100.0 42 ................................... TATGAACATGCCTACAACTGACACCCTAGACAACTCTATATT 142178 35 100.0 37 ................................... TGGATAGAGTTCGTAATGATGCTATTAAAAAAGCATC 142250 35 100.0 38 ................................... TTTTCTATATTTGCTAGCATCTTTATTATTTTTTATAC 142323 35 100.0 37 ................................... AGTATATTCTGCAGATATAACTGCATAGAAATTCTTA 142395 35 100.0 33 ................................... TAAAATGCTGTGCAGGTAAAATCACAGTATTAT 142463 35 100.0 36 ................................... CGATAGATAGGAACAGCTACCTTATCGCCTGGTTTG 142534 35 100.0 36 ................................... TGGATCATTAAGCTCCCCGGATGGTAGCGAAATTCA 142605 35 100.0 36 ................................... TGATGAAATTAAAGTTACTAATGTTGCTCACTATGA 142676 35 100.0 36 ................................... GCTTCATAAACTGCGATAACACACATAATAATTCTC 142747 35 94.3 39 .......T...A....................... CGGTTTACATTACGCATAATAATTACAACTCTATTTGCT 142821 35 91.4 34 ...........A.....T................G CAACCAAGGAACGCATCCACACTTCCACAATTAC 142890 34 80.0 0 ...........A.......-...T.A.....TCG. | A [142919] ========== ====== ====== ====== =================================== ========================================== ================== 13 35 97.4 37 GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Left flank : ACTTGGTATTAAAACGGCACTTGGTATGGGTGGTGTGAAGTGTGAAATTATAGAATAGTTTCCACTAGAAATATATGAATGTTAAAAAGCTAATATTCATATATTATTGGCTTTATCTGAATTTATAGATAGAGTTTTTTGTACAGTTTTACTTGTTTATCTGGGGATAGTAGATAGTATCTTAATTGTCTAAATATGGTATTAAATGAGAAGAATTGACATGGATATTATGGTATGGTCTTAGACTAAGGGTAATAAGGGTAGATGATTGATTATATTTTTCTTTAAACTCAAATGAAAAGAAAATGAACTTAATTGTTGACGTAAAATCTATAAACCCTTATAATAACTGTAATCTTAGAAAAATCATTTACCACTAGTATTTACCTATGCTCATCGACATTTTAGAGCCAATGGGAGCACAATTTGACCGTTTACGGTGTGAGGTTTGCCAAAACCTATTTTTGAGACCCATGAATACTGGCTTTTTAAGACACGCT # Right flank : CAGACTGTGAGGTAGAAGCGGCACAGCACAACGATGAAATCCACCATATTGCAGTTATCTATACAGATTGAAGGTAAATAAAGGTGATAAGGGGTTGCACTATATTTTTATATCTAATAGAAAACGAGTGAATTTTTTGATTCACTCGTTTTTTTAGTCTTAGTTTTTTTGAATTTGGTTATATTAGATTTCATCCTATACTAAAGATGTAGCCGATAAGCGGTAATAATTTTAATATGCTTAGGGTATCTTAGTTTTGTATTAAATCATTGGTAGCTTGTTGGGGATTATAGAAAATATGTATAGTGTTAGGTATAGGAGGTAGTATATGAACGTTAATTGGAATGGATTATTCTAATAATAGTATATTTAGTTGTAATGATAGGAGGGATGTTATGTCACCTTTAGCAGTGGATTCTGCAGTAGCAGTGTTAGTAGCGGTGCTTGATGCACTTGAAGAGTAATTTTATTTATGTATGTTGATCGGTTAAAGTGTGTAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 156832-157519 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG770216.1 Veillonella sp. 6_1_27 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 156832 35 100.0 40 ................................... ACTAAAATCTGGCAAAACAGAGTCTATCGTAAAACCTATG 156907 35 100.0 34 ................................... CATGAGTTTTCGCTTCACCTAAAGAATACCATAC 156976 35 100.0 38 ................................... GTTCCTGCATTTTTGAAGGAAGATGGTTATTTAGGTGA 157049 35 100.0 37 ................................... AAAAATAACTCTGCTGATAATTTCATGTCTTCGACAT 157121 35 100.0 39 ................................... TACTATCATCATTTGACGAATCATAGATGGCGATAGCTG 157195 35 100.0 38 ................................... TTGATAATCCTGATAACGAAGGCGAAATTTCTTTGGGC 157268 35 100.0 38 ................................... TATCAGTCGCGTGCCATGTGGGTACGATACTGTTTGTT 157341 35 97.1 39 ..................................T TATAAGATGTCACCTTCTTTTAATTCCCCATCGACACTA 157415 35 94.3 36 ....T......G....................... TGTACGGTCATGATTGGTTCGCCGATTACTAGCTCT 157486 34 82.9 0 .............T.........T.....-.CGC. | ========== ====== ====== ====== =================================== ======================================== ================== 10 35 97.4 38 GTTGCAACAGTACCTACCGTTTACGGTATTGAAAC # Left flank : TTTTTCTGAGTAGGTATATGAGAATATATCCAATATAATTAATATATCAGTTAGAACTGAGTGATTAGGGATATGCATGATAACATGATTTACCTCCTTTCTATTAAATATAATAAACTATATCATCATTTCGTTCGTGAATATTGCATATCCCAATCAAAGACCTATCCAAATGATTTCATGTGGGTAGGTCTTTTTTGTATGTCATATATGGTTTAAATCATTTTCTAAGGTGTTATAAATAGTCTAAAATCTAATAAACATAGACAATATCTATGTTTCTATAAAAATAAGCTAAAAAGAAAATGATGAAGAAGATTGACGTAAAATTCAGAAACCCTTATAATAACTGTATTCTTAGTAAAATCATTTTCCACCAGTATTTACCTAAGTTTATCAGGACTTTTGATCTAATGGGTTCGCAAACTGACCGTTTTCGGTATGAGGTTTTCCAAAACCTAATTTTAAGGCCCATGAATACTGGACTTCTAAGACCTGCT # Right flank : CGAAGGGTGCTAGACTGCAGAGGAGAAAAGCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGTGAAGTTAAAACGAAGGTGAAAAGGTAACAGTTTTTATCGTTTATGATTGTGTATTTTCATATTTAATGTAAAAGGGTGAATCTTTAGATTCACCCTTTTTTGCGTCTTAGTTTTTTTGAATATGGACTTGTCGATTTTCATTCTATAATTATTTTGTAACCCAGAACGAAATACTTGAATTATGGAGATGATAGTTCGCCTTAGTTTTTATGAATTCAATTGTATCTTTGATAAGGTTATACTATGGATAGTTAATTTAGTCATATGAGTTGGGAGGTAATGAATGACTTGTAGAATTGGATATTTGAAATTGTAAATGTCAAAGGATTTGTTTTGTTTATATGTATTTTAGGAGGAATTAATATGCTACCATTATTTGCAGCAGCAGCGGCCGCAGCCGCATGGGAAGGTTTTGCAGCAGGTGTATTAT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTACCTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 175562-176887 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG770216.1 Veillonella sp. 6_1_27 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================================================== ================== 175562 35 100.0 38 ................................... TGGGGTATGAATATAAACCCAGATAAAATTAATGTATA 175635 35 100.0 34 ................................... TCACGCATCCAAGTTTTGGCAGCTTCAATGGAGT 175704 35 100.0 36 ................................... TTACTCATTTTCTTTAATAAGAGTTGCAATAGTTGA 175775 35 100.0 40 ................................... TTTAAATATTTTTACCTCATGTGGTGTAAGATTTTTTAAC 175850 35 100.0 39 ................................... TCTACCGCCTAGCGGTGTTAATAATAACTGAGTACGTTT 175924 35 100.0 36 ................................... TCACTTTGATTCTTTTTAGCATAATCCCGATCTATA 175995 35 100.0 38 ................................... TTGAGGAGCGCCATTAGCTTCTTCAACGTTCTTCTTAA 176068 35 100.0 38 ................................... GTTCAAAAATATTTCCGTTGTCGATTGTTTGGTTTATG 176141 35 100.0 37 ................................... AGTATGTGATCTGATTGCTTTTTGTACTATTTCTTCG 176213 35 100.0 37 ................................... CATATAATCCATCGCCTTGTTTCCCTTTCTTGTTTGT 176285 35 100.0 40 ................................... ATTAAAAAAACGGGTAGGAAATTAATATATGTTGACTCAA 176360 35 100.0 39 ................................... TAACGGTTGAATGCTGGGTTAGGGTTTGGAGTTACAAAT 176434 35 100.0 36 ................................... TTTTCTCGCCACTCTGCATAAGCTTTAGGGTTACGC 176505 35 100.0 42 ................................... TTTTCATGATTCTTCCTCCTCATCATGATATAAATAATAATA 176582 35 97.1 36 .C................................. TCTTCAGAATCTTCATCTTCTTCGGATTCTTCTTCA 176653 35 85.7 88 .............................GCGC.G AAGGGTGCGAGACAGCAGAGGAGCAGAGCGACGATGAGGGCCGCACATCTCAAGTACCTGAACGAAGTGAAGGTAAAACAGAGGTGAT 176776 34 82.9 43 .AG.T..T...-.....T................. CTTGCACAGTTTGACCACTCAAATGAGGAATGTTAGTGCTATC 176853 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================================================================== ================== 18 35 98.1 41 GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Left flank : ACCTATAAAACGATAGAAGAATACAAAAAAACATTAGATAAGTATGTATTTTATATGTATAAGTAGAGACTATATAGAAAAATTTATATACCTATTTTTATAAAGATTTCCATACAAAATTTTATTTATAGATTAAGGTTATGAGCCTAAAACATAACTATATAGTTATGATCTTTATGCCTTAAAGAATAAAAGAACTCGCCTAACAAAACGTTAGGAGGGTTCTTTTGTTTAAACTATTTATTGAAAAAAATTAACTATCAAAATTTTATTAATAGTATTTCCTTAAAATATAATGAAAAGAAAATGAATTAAATATTGACGCAAAATATGAAAAACCTTATAATTACTATAACCTTAGAAAAATCATTTACCACCAGTATTTACCTATGCTCATCGGCATTTTTAATCCCATGGGAGTCTAATCTGACCGTTTATGGTGTGAGGTTTGCTAAAACCTATTTTTAAGCCCCATGAATACTGGCCTTCTGAGGCATGCT # Right flank : CCATACGGTCTGGGTTTTCAAGGTCTAAACATTTTTAAAGTTGCAAAAGCTCTAACTGTTTGTGGTATGTACGGTATATTAATAGAATCATTAGTGTTAGTATAATATCTTTATAGATCTATTGTATTAGAGCTAATGGTTCTATTTCTTTTGTTTATGATATAATATAGGTAGTTTTAACCTTTGGAAAACAAAAACTGCGCCGTTTCGATAGTGGTGCGGTTAAACGGCATTATTTTAGCTCGCTAAAGTGCCTTTTGGGGTGGATTTACAATCTTCGCCGTTTTTTGTATTTTGGAACCAGCAAATATCTGTTGTTCCAAAGATAGGGTTAAAATAAATAATCCCCATTAGGGGACGGAAACCCCATTGTCCAATACATGTATGTTCAGCTTTTTCCATTGCAGTTGGTTAAATTAAATGATCCCCTGATGGGGACGGAAACCTTTTTACGGTATGGTAAACTAACATACCCATAAGAATGTAGCGTTAAATTAAAT # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 192493-193122 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG770216.1 Veillonella sp. 6_1_27 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 192493 36 100.0 30 .................................... GGGCGCTTTGTAATTAATTAAGCAGTAGGT 192559 36 100.0 30 .................................... TGCTCGGAGAGTTCGCACCTACGAGCACCA 192625 36 100.0 30 .................................... AATATTTTTAAGACTGTCATCAAGTGGATT 192691 36 100.0 30 .................................... GCTGCAGGAGTTCGCATCATTGTTACTGTA 192757 36 100.0 30 .................................... AATACTGGGAGCGGGTGCGACAATCGGAGT 192823 36 100.0 30 .................................... ATCCGTAAAAATATGTCTATTGAAGATATG 192889 36 100.0 30 .................................... AACATTTTCTGATGTAGAAACACGTTCTGA 192955 36 100.0 30 .................................... CATCTTCGCCCATCCATTCACGGAATTCCT 193021 36 100.0 30 .................................... GCAAATCAGTAAAGTCATTTGTTGGATGCA 193087 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 GTTTGAGAGTAGTGTAATTCTGTAAACCTCTAAAAC # Left flank : AACTAAATTACAAAATCAACTATCTAAAGACGCTTTATTGATGACTGAAGAGGTAGCGGATATTGTAAATCGACTTCATGCCTTTTACTATTCTTTAGAATTTGGATATCCTTTATCAATCCAACATAAACTTGAAATTGGGACTGCTGAACTTATTAAATTAGGGAGTTTTAATTTTGAGTTTAATCGTAAAGGAGATGTTATGGATTTAATGTCCTATATAGAAGTGGTGGATACATTATTATCTCCTATGCTGTATATTATGGTGAATTTAGATCTAGTTTTAAATGACGATGAACTTAATGCATTTTATCAAAATATGCTAAGTCGGCAATTACGACTGGTTTGTCTAACAACTGGATCTCTTAACAAAGAAAAACTTGATAAAAGCCTTATAAATGGGTATATTTTAGATAATGATTTCTGTGTTATTTGAAGAGGATACAGAATTACACCTAGTGGTAGCTCGAGTTATTCTTGAGCCTCAAATTTAATTTGGG # Right flank : CGAGCAAATTAGATCCTTCTTTAAAGAGTTGGTTTGAGAGTAATGTAATTAGAATTTAGTAGATTATAAATTTGTGAAACGATATAAAAAGCCGAGCTACCTTGTTTTAGTAGCTCGGCTTTATTTGTTAATTTATATATTTATATAATATGATGCTTATTGTATCGTATATTAGTTCGCTCTATAATAGATTTAGGATAGTTAGACGAGGTTGGGACTCTCTTCGTTTTCGAAGGGAGGGATAAGTCTATGAGCGATTATGAAATAATCATGCTTTTGTTACAAGTAATGGCTATTGTTATTGCTTTTGGGGCTTTAATAGCACTTATTTGCCTTACAAGAAGCAAATAGCCCTCCGTTGCCTAGTGTAACTAGATAACTGAAAGGCCATTTCCTAATGTTTTACTGATTTAGAGATGAGCCTGACGGCACTACTCGTCTGACTATCTACCTATATTATAGGGATAAAGATTTATATCGTCAAATTGAGATAAACCTTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTCTGTAAACCTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.90,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //