Array 1 88369-89984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEY010000010.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-36 NODE_10_length_105184_cov_3.933389, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88369 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 88431 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 88492 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 88553 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 88614 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 88675 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 88736 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 88797 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 88858 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 88919 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 88980 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 89041 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 89102 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 89163 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 89224 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 89285 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 89346 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 89407 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 89469 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 89530 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 89591 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 89652 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 89713 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 89774 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 89835 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 89896 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 89957 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48587-46689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEY010000034.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-36 NODE_34_length_49668_cov_3.765023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 48586 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 48525 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 48464 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 48403 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 48341 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 48280 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 48219 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 48158 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 48097 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 48036 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 47975 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 47914 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 47853 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 47792 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 47731 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 47670 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 47609 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 47548 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 47487 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 47426 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 47368 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 47307 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 47246 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 47185 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 47124 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 47063 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 47002 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 46941 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 46840 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 46779 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 46718 29 93.1 0 A...........T................ | A [46691] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //