Array 1 1877289-1877139 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056773.1 Streptomyces violascens strain YIM 100212 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================= ================== 1877288 23 95.7 41 ...C................... ATCGAGGGGTGCTGGTCGGTGCCGACCTCGCGGTCAAGGAT 1877224 23 100.0 40 ....................... GGGTTGTGCGCCGGTCCGATGTGACCTGCCGGTCAAAGAC 1877161 23 95.7 0 ...C................... | ========== ====== ====== ====== ======================= ========================================= ================== 3 23 97.1 41 GGCATCAAGCGCCGGCCGGGCTG # Left flank : TTCGAGCGGTGGCGCGCCACGTCCTGGAGCCCCACCACGCCCAGCACCTCGTCCACCCGGCGGGCCGGGATGCCGGAGAGCTGCGCGAGGCAGAGCAGGTGGTTGCGGGCCGAGCGGCCGCCGTGCACCGCCTTGGCGTCGAGCAGGGCGCCGACCTGGCGCGGGGCGTTCGGGACGCGGCGGTAGGGGAGGCCGCCGATCGTGACATGGCCGCTGGTGGGCTCGTCCAGGCCGACGATCATGCGCATCGTCGTGGACTTTCCCGAGCCGTTCGGGCCCAGGAAGCCCGTCACCGTGCCGGGCCTCACCTGGAAGGAGAGGTCGTGGACGGCGGTCTTCGCGCCGTAGCGCTTCGTCAGGCCGGTGGCCTCGATCATGTGCTCCCCGCACCCGTCGACAGAGTTCCTTGCCGGGGTTGTCCCCGTCAACGTAAGGAGGATAGTCACCGGCGTTCGGTTCCGGCCAAGCGGAAGTTCCCTCCCGGGGTGGGCTGGGGGGTT # Right flank : TTGGTAGCCCGGCCGGCGATTGAGGCCACCCGGTCGATGGCCTGGTCCCGTCTGGCTAGGCGTCGCGGTGGCGGAGTAGGGCGTACCCGATGGCCAGGGAGGCGATCACCCAGAGGGCCATGATGCCGAGGCCGCCCCAGGGGCCGTAGGGGGTGTCGTCGTTCAGCGGCGCCACCACCTGCATGATCTTCGAGCCGGCCTGGTCGGGGAGGAAGCGGCCGATCTTCTCGGTGGCGGAGACGGCGCCGAGGATGGAGGAGACGAGGAAGAAGAAGGGGACGAGGATGCCGAGGGAGAGCATGGGGGAGCGGAGCATCGCGGCGACGCCCATGGAGAAGACGGCCATGAGGGTCATGTAGAGGGCGGCGCCGATGACGGCCCGCAGCACGCCGGGGTCGCCGATGGAGGCGGAGAGGTTCCCGAGCAGGGCCTGCCCGAGGAAGAAGGTGGCGAAGGTCGTCACCAGGCTCACCAGCAGCGCCAGCACGGTGGCCACCGCG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCATCAAGCGCCGGCCGGGCTG # Alternate repeat : GGCCTCAAGCGCCGGCCGGGCTG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 2416936-2416784 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056773.1 Streptomyces violascens strain YIM 100212 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2416935 30 100.0 31 .............................. GGCGGCACTGTCGATCGGACCGAGCCCAAAT 2416874 30 96.7 31 ..............T............... AGTGGAACGGCTGATCGCACCGAACCAACTC 2416813 30 96.7 0 ..........................A... | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 32 CAGCCCGGCCGGCGCTTGAGGCCATCGGTA # Left flank : GAATGCCCCACCACCACCGGAGCCACCCCGAACCCGTCCACCGCCTCCTGCACCACCCGCGTGTCCTCCCGCAACGACCCCCGATGCAACTCCGGAACCACCACCTCCACCCCCACCCGCCGCAACCCCGCAGCCACCACCCCAAAATGCCCCGCCTGGTGATAGAGCCCATGCACCAACACGACCCCACCCATACGTCCCCCCGCCTGGTCCTGAATTCAGGACCACTCGCCCCTTGGTCGCTGCGTTCAGGGTCACTGACCCCCTAGTTCTGCGTTCAGAGTCCGGCCCTGAGTTCAGGGTCCCCCCGTCCTGGCCCTGCTTCCACAACCCGCCTGGCTGGTCCTGCACAGACGGTCCGCTCTCCCTGCTCCGATTCCAGCAACGGCCTACTCCCTCCCGAACTCACCGCCCACCTCTCTCGCTCCGGCCCCCTGCCCCCGGGCCCACGGCCCTGCCCCTGCTCAGCGGCCACCTTCCGATCCAACGGACACCAATCC # Right flank : AGCGGCACCCCCAGCCCCAGAGGCCGCCGCCAGGCAGACGCACCCACACCTGAAGCCACACCCCACCTCCCCACCGGTAGGCTCTGATCAAGCGGGCCGCAAGCCCACCTCACCGCCCCGAAGGGAACCCCCATGGCACTCGAAGCCGGCCTCCTGGAAATCCTCGCCTGCCCGGCGTGCCACGCCCCCCTTGAGGAGTCGAAGACCGACTCGACCCCGGAACTCCTGTGCACCGGCGAGGGCTGCGCCCTCGCTTACCCGATCCGCGACGGCATCCCCGTCCTCCTCGTCGACGAGGCCCGCCGCCCCGCCTGACCAGGGCGGACAGGCGTACCCGCACGCGCGGCACGCGAACCCCGCCCGGGGCGGACCAGGCGTACCCGCACCCACGGAACGCGAGCCCCCGCCTGACCAGGGCGAACCAGGCGTACCCCGCGGACGCGAGCCCCGTACGAGGCGCGACCGAGCCTCGCGGAGGTAGCCCGCCCCACCCCGGGGCA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCATCGGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 3302178-3302439 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056773.1 Streptomyces violascens strain YIM 100212 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================== ================== 3302178 28 100.0 33 ............................ GGCTCGGCGGCGGGGGTTGAAGACGGTGAAGTC 3302239 28 100.0 33 ............................ GCGTATACGCAAAAGGTTGTATCGGCGAGCATT 3302300 28 92.9 84 .............A..........A... GCCCACGGACTGGGCGACCGCCAGGCCGCCCTCGCAAGGGTCGAGGTGGTCCGGTACGCGACTGGTGTGCGACCAGTACGTCAG 3302412 28 75.0 0 .C..CT......T.C....C....G... | ========== ====== ====== ====== ============================ ==================================================================================== ================== 4 28 92.0 50 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : CGCCGACATCACCCGAGCCGTCGAAGCCGGCGCCACGGGCTACCTGCTCAAGGCCGAACGCCCTGAAGAGCTCTTCACGGCCATCAGGGCTGCGGCCTCGGGACGTACGGCGTTGTCGCCGCCTGTGGCACAGAGGGTGATGACTCACTTGCGTAATCCGCAGCCCGAGCTGACGCCGAGGGAGCGGGACATTCTGCGGCATCTGACGCAGGGGCTGGGGAACCGGGAGATCGCCCGGGCGTTGTTCATCAGCGAGGCTACGGTGAAGACCCATTTGGGGCGGATTTACCAGAAGTTGGGGGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGGAAGGAGCGGCGGTTGTTGGGGTGAGGGGGTGGGCGGCCGGGGGGGGTGGGTTCGCGCGTTGGGAGGCGTGGCGGAAGGGGGGTGCGTAGGTTGGGGGCTTGAGAAGGAGTAGAAAGGTGATGAGTAAGGAGATGGCAAAGGCCGCCTGAAGGTGCAGGTCGAGAAG # Right flank : CCCGCCAGACCGGACAGCTGATCCCCCGCCCAACTCCCCGACCGAACCGACCGAAACCCATCCCGCCGAAGCGCAAGCACCCCCGAGCCCGCAAAGGCAGCACACCCACCCCAGCCCCGCCCTGCCCGCGCGTCAGACCCACCAAGGCCACCCCCCGCATCGCCCACCAAACCACCCCCGCCAAAACACCCCCGAGACCAATAGAACACCCCCGCCAACAGCACCCACGCCGACCACCCTCAACATCACGAACACATGATGGTCACAAAATCGCCACAGGCGGAGCATCCGGCACTCGCGGCATACCTCGCAGCCCCACACTGAGCGGACGCATCCGCATTCAGGGGGAATCATGAGACGCCAACTCGCCATCGCCGCAGCATCCTTCACCGCTGTACTCGGCCTCGCCGCCTGCGACACGGAGGTCACCTCCTCCCCCGACAAGCCCGCGGCCGCCGGCGACGCGAAGCCCGGCAAGGAAGCCGACAAGGCCGAACAGG # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.79, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4943156-4942944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056773.1 Streptomyces violascens strain YIM 100212 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4943155 29 100.0 32 ............................. GTGGCCAGTTTGATCTGTGCGCTTGCTCGGAG 4943094 29 100.0 32 ............................. ACGGTCAACGGCTACGCCGCCGACTGGAAACA 4943033 29 96.6 32 ..............T.............. GGGTCGTCGCCCTTGTCCGCCGCAAACACCAC 4942972 29 75.9 0 T........T...GT.......C.AC... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Left flank : GCATGAGCTGACGCCGGTTCTCTTCACGGTGGCGGAGGCGGGCGATCCGGTGGCGTCCGGGCTGGTGGACCGTCTGGCGGACGAGGTCGCCAACATGGCGGCTGTCGCGCTGGGGCGGCTGGGGTTGCTGGACTCGCCTGCGCCCGTGCTGCTGGGCGGGAGCATCCTGGCTGCGCGACGGCCTGGGCTGGATGCGGGGGTGCGGGGGGAGTTGAGCCGGCGGGCGCCACTGGCGGAGGTGCGGGTGGTGGAGGCTGCGCCTGTGCTGGGGGCGGTGCTATTGGGGATGGACGCGGTGGGTGCGGGGGTGGGGGCTTATGAGCGGGTACGGGGGTGGTTCGGGTGAGGAGGCTGTGTGGGGGCGTGGGGTGGGCTTCAATGGAGAGGGGCTGGCGTTTGCGAAGCTGAGGGATTTTATGGGCTGTTCGCGCGGAATGCCGGAGTTTCTAAAGTTGGCGCGGGTCGGGGGTAGGGCGGGGTAAGCCCGCAGGTCGGAGAGA # Right flank : TGCTCTGTGATCACGGCGAGCAGCAGGGTCAAGCGGGTGCCCACACATGCAGGCCTCACCCACGCCGACCCCGACCCAGTCGCCGTACTCCGCCCCCCCAATCCCCCACCCCCGGGAACCAACCCCACCCTCCACCACGTATCCCCCACAGAGCCGTCCACCGCACCCCCCGCCCACCCGGGCCCCAGCCCCCGGATCAGGTGAACGCCCGTGTGGTTCGTGGGGAGTGCGGCCATACTGGCGGCCGGGCACTAGCTTTCCCGGGAGTGGGGAAGGGTGTTCTGCGACAGGACCGAGGGGGAGGTCGCGTGAGCAGTCAGCCGACGGGCGGGGCGCCGCCGGGGTCCGGCGTGGGTGCGTTGTCGGTGCCGGGGCAGCGGTCGCCCGCGGCTGCTCCTGAGACGCCTGGTCCGGCCGGTGAGCCCGGTCATGTTCCCGAGCCGCCGCACGAGCCCGGTCTGCCCTCGCGGCTGCGGGCGCAGGCTCGTACCGTGCCCGGG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //