Array 1 1878-1618 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOL01000106.1 Actinokineospora pegani strain TRM 65233 875, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1877 37 89.2 37 ......T...C....T....C................ AGTTCGAGCGCGAGCGCCGTGGCATCCCAGGTCGCGT 1803 37 91.9 39 ...........TT.......C................ ACCGCCAAGGTCGGCGCCGACCTCGACTCCCTGGCCCGG 1727 37 100.0 37 ..................................... TACTCCGCAGACCCGCGGTGGTGGGTCAGCATGGGGA 1653 36 89.2 0 ....................C-.............GT | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 92.6 38 GCAGCGCTGGTCCTCCGGGATCAGCGAGGATCGCAAC # Left flank : TGAAGGCGGCGAAAGCACCGAGATGGGCACCAAGTGGACCGTCCACTACGGCCTCTATCGAGCTCACCTCCACTACAGCGCACCCCGCGGCACTGACACCGGCGTCACCCCGGATGACCTGGCGACCCTGTGGCAAACCCTCACGAACCTCTTCGAACACGACCGCGCTAGCGGACGCGGCGAAATGGACGTCAAAGGCCTCTACATCTTCACCCACGACGACGCCTACGGTCGAGCTCGTGCAAGCCAACTCTTCAGCCGCATCACCATCAATGCTCTGAACACCACGCCCCGCACCATCAACGACTACAAAATCGACACAACCGACACCGAACACGCTGGCGTTATCCTCACTACGCTGGTTGGCTGACTGTTACTGGCGGTCGCGAAGGCATAAATGTGTCGTGACAGTCACCGTTCCGTACCTATACCGCTAAGAGGACTAGAGCGGCCGAAGCCACTCTGGCTTGGCGGACTGCCCAAGAGATGTGCGGTTACTG # Right flank : ACAACCCTGAGCGTCCGGTGCGCCTCAGCTTCGCGGGCAGCGCTGGCCCCCGGTCAGCGCAGATCATAATGTCGCGCGGACGGCGCCGCACACCCACAGCGCGCCGATGTGATCGCACTGACCCTGTAGGTCGTGGACATGGGTGCAATCACTGTTGGTCGTAATCTTTGTGGGATCGATCTGTCGACCCGCATTGGGAGCGGGTTGGCTCATTGAACCGTATTCAAGGGTCTTGAATTGACCAAAAATTGTCTAGTCGACCTGCGTTGATATCGCCTATGCAGGTCGGCGCTTCGGGTTTATCTAATTTGACACGGTAGGGGTCACTGGTTCAATCCCAGTATCGCCCACCAGTAGTTTCTGCTGGTCAGACGGCCCGTCGACGATCTTCGTCGGCGGGCTGTTCTGCGTCTGTGGGAGCAGATTGGGAGCAAAAGATCTTGACCCCCTTCGTGGTGCGGTAGAGGTCACCCCGGATCGTGCTCCCGGACTGCTCCCAA # Questionable array : NO Score: 3.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGTCCTCCGGGATCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8431-8102 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOL01000106.1 Actinokineospora pegani strain TRM 65233 875, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8430 37 89.2 38 ..........C.....C....C..............T CACGCGACCGCGGCGATCAGCGCCGTCTGAAGCGGGCC 8355 37 86.5 37 ...........G..C....C.C.............G. GTCGAGGGGACGGGCCCGATGTCGGAGAAGATCGGCG 8281 37 100.0 36 ..................................... ACCGTCTCCGGGTCGGCCTGGCCGTGTGTGATGGCG 8208 37 89.2 34 ......T.......C.A....C............... GTCACCGTCGACCTCGGCGCAGTGTGGCTGGGCA 8137 36 81.1 0 TA..........-...C....C.......GC...... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 89.2 36 GCAGCGCTGGTCCTTCGGGACTAGCGAGGATCGCAAC # Left flank : CCGCAGATCATCCCGCACACCATCGGTGTCCCAGGCATAGAAATTCAGGAGCCGCTGCATCCGCTCCGGACCCGCCTCGCCGACCGCCTCGGCCAGCGTCCACCCGTTCTTCCTCTCCGCCTCGGACAGCAAACCCCTGACATACCAACGCATCTGACGCCGAGACTCCACTCTCGGAAATCGAGCGGCGAACCCGCCCACGAACGACTCAAACCCCGCCGACCACGACCGCACATCCTCAACCAACACCATGATCAACTACCACGCCAGCCAGTCACATCACAACCTGTCGTTGTCGTATTAGGTCTTCGGTGAGGGCCAGGTCGGGGTCGAGGCGAAGGATCTCGAGAGCGGCGCGCGTGGAGGACGCGTCGGTGTGGAGGCGGCGGGCTAGGCCGGGGATCGTGATGGGTTTGCCGTGCACCTCGGCGCTGTAGGAGGTCAATTCGATGATGGCAGCGGAGAGGCTCCAGTGGTGGTGGACCTCGGCGGCTTTCAGT # Right flank : CCGATGAAACGCGACCATCTTTGCTGATCACTACTCAAGATCATAATTGGTCGACTATCGAGCCAGGTCTCTAACTGGGGATGGTAGGCGAAGCGAAATTTAACTTACGTAGCTACTAGCAAGTTCATTCCAACTATTGCTGCCTGTTGGCTCAACGTTCGGCTTATTTTTCACTCGAAAGCGTGCCGATCGCCGCTATTTTTGCGAAGATGATTCATTTTCTCTGATTTTGTCGGTGTCTCGGAGTACCACTGACGCATGTCGTCAGATGAGAGTGATTGGTGTCTGTGGGCGCACAGCGGCAACCATGCCGGGGCATGGCATGGGTTGGAGGAGCACCTGAGGGGTGTCGCGGAGCGGGCCGAGGGTTTCGGTGAGGTTTTCGGCGCCGGTGTGTTGGCCTGGTGGTTGGGCTTGCTGCATGACGTGGGCAAGGCGACCGATGAGTGGCAGCGTGGGTTGGCGACCGTGGCGTCCACGGGTGCTTCGGTGGGGGTAGA # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGTCCTTCGGGACTAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.00,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 80345-81901 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOL01000122.1 Actinokineospora pegani strain TRM 65233 893, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 80345 29 96.6 33 ............................G CAGGTCAGCAGCCCGGTCGCGAGCGCTCGTCGT 80407 29 100.0 32 ............................. GAACGGGCAAGCGACGAGGTCCGCGCAGTGGA 80468 29 100.0 33 ............................. AACGTCTTGAACTCGGCGTCGGTCACCCCCGCC 80530 29 100.0 31 ............................. TTGTGAATGTGAAAGCACCCCGATGTCGGGG 80590 29 100.0 32 ............................. ACCTGGTCCGCTTTCGCGTGCTCGGCGCGCGT 80651 29 100.0 32 ............................. GGCGCCCACACCCCGGCCTGCCCGCTGAACCC 80712 29 100.0 32 ............................. GGGATCGTCCAGTCCTCGCCGAACTCATCGAG 80773 29 100.0 32 ............................. TCGGCGCCGGGGAGTCCCCGCGCTACACCGAC 80834 29 96.6 32 ............................G GCCAGCTTGCGGCGGGCTCGGTGGGCCTGCTC 80895 29 100.0 32 ............................. CAGATCCGGACACCGACAACCTCAGTCGGACC 80956 29 100.0 33 ............................. GCGCACCGAGGGGAGAGCTTCCCTGAGCACTGC 81018 29 100.0 32 ............................. AGACGATGACGGATCACGCCCATACCGAACTG 81079 29 96.6 32 .........T................... GCGGCCGAGCTGTTGAGCGGTTTCGGGACGCC 81140 29 100.0 33 ............................. AACCGCTGACATCATGACCCACCCCCGGGCACC 81202 29 96.6 32 ............................G TTCGACCTGAATGCGGCGGAGCTGCTGTCGGG 81263 29 100.0 32 ............................. GCGGCCAGGTTGACCCGCTTCTGCTCGAGCAG 81324 29 96.6 32 ............................G TGGGCCACCTCGCCGGGCAGCAGCAGGTGGGC 81385 29 100.0 32 ............................. CCCAGCCGGGTCAGCGTCTCGTAGACGTTGCC 81446 29 100.0 33 ............................. GCCGAGAGGTTCTGGTTCGTCCCGTCCGCGCGG 81508 29 100.0 32 ............................. AGCGGGCACCCACGCGGGAACCGCGACGCGCG 81569 29 100.0 32 ............................. ATCGGCGGCCGGACGTAGAGCTGCCCGGACTC 81630 29 96.6 32 ............................G GGTGTCCCGTTCGGACGGACGCTGCGCGGCAC 81691 29 100.0 32 ............................. GCGGCCGCCCCGTCAACGACAAAGACGACCTC 81752 29 100.0 32 ............................. CAGGCTCCCGAGTTGCCGGACGATCCGGAGTA 81813 29 93.1 31 ................T...........T GGCCGAGTTACCGCAAACAACTGTTTGCCGT 81873 29 72.4 0 AAT...T.........T.A....C...T. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 97.9 32 GTCTTCCCCGCTCACGCGGGGCTGTTCCC # Left flank : CGAGCAACGTCCAACCCCGCGCGGAGGTCCTGGGCCACCCGGCCACCAAGCTCCTGGTCCGCCACCAGGGCATGACCAGCGCCGAGATGGCCCTGGCCGCCACCGAACTCCTGGGCACCGCCATCGACGTCACCTACTCCACCAACCGGGGCCTCATCGAGATCTCCGCCCCCGGCGTCACCAAGGCCTCCGGCCTCAACGAGGTGGCCACCCTCAGCGGAGTGCCCACCACCGCCACCATCGCCTTCGGCGACATGCCCAACGACATCGAGATGCTGCGGTGGGCCACGCACGGGGTGGCGATGTCGAACGCGCAGGCGGAGGTGAAGGAGGTGGCCGATGAGGTCACGGCGTCTAACGCGGAGGATGGGGTGGCGGTGGTGTTGGAGCGGTGGTTCTGAGGGTTGCTGTGGGTAGTTGAGTGGTTACAGGAGGGCGGTTGGGTGCGGGAAGTGATGCTAAAATCGCTCCGACCTCCGCAAAGCCGCAGGTCAAGAAGT # Right flank : CCCTCACCCAACCACCCCGGCCCCCAAACCACCCCTCAATGCCGAAAAAACTTCTCCTGCCGCCCCTTGGACACCAACCGCAACCACTGCAAAAACGCCTTCGGATCCCGCTTAGTCCCCAAAAAGTACAACCCGAACCGAAAAACCTCCAACAACCCCAATTTACGCATCCCCGGCTGCGCCAGCAGATACCCCCGGTTCCGGTACGTGTAATACCGCTTGATCTCGTTCTCCGGGTCCTGCGCGTGCAGCCGCCCCCCCAACATCGGCTTGAACTCGTCCGACCCATCCGGGTGCAGGTACGCAACCGACAGGCACGTGCCGAAGGGCAGCCCGGAACGCACCAGCCGCCGGTGGATCTCGACCTCGTCGCCGCGGAAGAACAGGCGGTAGTCGGGGACGCCGATGACGTCGAGGGTGGAGGCGCGGAAGAGGGCGCCGTTGAAGAGAGAGGCGATGCCGGGCAGGAAGTCGGTGCCCAGGGCGGAGGTGTCGCGCTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCTCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52434-53805 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOL01000056.1 Actinokineospora pegani strain TRM 65233 801, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52434 29 100.0 32 ............................. TTGAGCGTCGTGCGCGTGCTGGGTCGCATCGG 52495 29 100.0 32 ............................. GCGTTGGTGGTGGCGTTCGACGACCGGGTCAA 52556 29 100.0 32 ............................. ATGGCCATGAGTGTCTTGGCTTCGGCGCTGGT 52617 29 100.0 32 ............................. CCGGTCAAAGAGCACTTGTCCGAGGGGTTAGA 52678 29 100.0 32 ............................. AGCGCCGTCCAAGCATCGATCTCCGAGACGTC 52739 29 100.0 32 ............................. ATCCCGCCCGCGACCAAGACCGCGTTGGACGA 52800 29 100.0 32 ............................. TACCTGTCGAACGTGCAGTCGAAGAAGTTGGA 52861 29 100.0 32 ............................. TGTACGACCTCGATCGGGGTGGTCTTGCCGCT 52922 29 100.0 32 ............................. CCTTGCAGCATCGAGAATCCGTCCGGGGCGGT 52983 29 96.6 33 ............................A CTCATCGCGTTGTGTTTCGTGATGCGACGCGAC 53045 29 96.6 32 ............................T CGGGGGGTCAGGTCGCGGTGGTGGGCCGACTC 53106 29 100.0 32 ............................. AGGCTGTGCAACCCGAAACAACCGACGGTCTT 53167 29 100.0 32 ............................. CCGGGCACCGGTATTCCGAGCCGGACACTCCT 53228 29 100.0 32 ............................. TCCCGAAGGTGGACACCATGGCTTTCAACTTC 53289 29 100.0 32 ............................. GGCGAGATCAGCCCGCCGTAGAAGGTGACCCA 53350 29 96.6 33 ............................A CTGACCACCTCCCTGCAGGAGCTGCTTGCCTTG 53412 29 100.0 32 ............................. CTCGATCACCCCGTAGTCACGGGCGAGCTCTA 53473 29 100.0 32 ............................. CCCACCGCGAGTCAGCTCAAGGCCGTGGTTTT 53534 29 96.6 32 ............................G CACGCCAGCGGAAAGAATTTCGACATCACCAA 53595 29 100.0 32 ............................. GGGTGCACGCCCACGAGAAGCCGGAGCGGGTG 53656 29 89.7 32 ..........T.C.............T.. GTCACCGCGGGATTGGGCCGGTTCGCCAAGAA 53717 28 75.9 31 .G......AT.-C.....AC......... AAGCCCGCCATGCCCGCACGCAGGCCGTGCT T [53744] 53777 28 75.9 0 AC..C.......C....-....C..C... | T [53802] ========== ====== ====== ====== ============================= ================================= ================== 23 29 96.9 32 GTCTTCCCCGCGTGAGCGGGGCTGTTCCC # Left flank : ACCCCAGCCCCACCGGAGCCAACCAGCCGCGCCCTGCAATCTCTCGCCCGACCCCACCCTCCTCGAGCACATCCAGCCCGGCACCCCTCTACAACGACAAGCTCTTGGCCCCACCCTGCCCGTCGTCCGCACCGACGCATTGAACTTGTTCGACACTGACTCCTGGCGTCGCCGCCGCTTCCGACGCGACATGGAGGCGGGCCTGATCGGCATCAATGTCCCATCCACGTGGACTACAGCTTCGGCGGCTGGGAGAACTCCTTGTTCGGCAACACTCATGCCTACGGCCTTGACGGCCTGCATTCCTCCACTCGCAACAGGTCGTCACCACTTGCTGGACTGACCTATCCACAGCGGGGAAGCTTGGGGTCTCTGCCGAGACGCGACGGTCGGAGAACAGATCATCACTCCATGTGATCAGTCGGTCACTGAATTGTCGTGGAGGTAGAGAAGTGATGCTAAAATCGCGATGGCACGCGGATAACCGCAGGTCAAGAAGT # Right flank : CAACCCGGCTGGCCCGCACCAAACGCCCCAAGCCCCCACCACACCAGCCCGCCCCCGACGAGACAACGTAGATCGAATGCCCATGCCCCAAGCGGCTCAACCGCATAACCACCCGACCTACGCAAGAGCGCTCAGCTAAACCGGCTCAACACCTCCTTCGCGGTGTCGATCGGAATGCTGAAGCCGATCCCCACACTGCCCGCCGACCCGTTCGAGGAAGTCACCGGCGAGTAGATCGCGGAGTTGATCCCGATGACGCGCCCAGCAGTATCAAACAGCGGACCCCCCGAGTTGCCCTGGTTGATCGAGGCGTCAGTCTGAATGGCCTTGTAGCTGACCGAGGACCCGCGGTCCGAGCTGATCGACACATCGCGGTCGAGAGCGCTGATGATGCCGGTGGTGACAGTGCCCTGCAGCCCGCCAGGGGAGCCGATGGCGATGACCTCGTCGCCGATGTGGGCCTCGGTGGAGTCGCCGAGGGTGGCGGTGGGGAGGGATGA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGTGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 69487-69699 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOL01000063.1 Actinokineospora pegani strain TRM 65233 813, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 69487 28 96.4 33 ...A........................ GCCGGGGTCGGGGGGATCACCTCGGGGCCGCTG 69548 28 100.0 34 ............................ GGCCTGAACCTCGGTCCACGAGAGGCGGCTGACG 69610 28 100.0 34 ............................ CGCATCTGGTGGATCTGCGGCGGGTCGAGGCCGT 69672 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 4 28 99.1 34 GGAGCAGCCCCGCGTGTGCGGGGAAGAC # Left flank : GCAGCGGCCCGCTCCCCGCCCCAGCGAGCAGCGGCGCCGCCGTCAACTTCCCGATGATGTTCGACGTGGTCCCCGCGATCCGCCCGACGCACCGCGACTCGAGGTCGACGAGCGTCCGGTAGGTCTGCGCGATGTGCGGATAGGGGTCGACGACCCCCGTCGTCGTGTGCAACTGCGCCGCCAGGTGATCAATCTGCTCCGCGGTGACCCGCCGATCGTTCAACCGCCCCACGGGCCCGAGCAACAGTTCGGTGGTCGTCTGGTCCTGGGCGGGCTGCAACGCCGCAGCCCGACTCGCGGCCCGATTGGCGATTCGACTCAGAACCGGCTCGGCGAGTCGCCGAGCCGCTTGGCGAGGCAGCGTCATAGCGGCGGAGCGTACTCGTTTCGATCGATCCGGTGACGACGGCTATCGGCTGGATGGCGGTAGCCCGCAGTGGTCGAGTCGGGTACCGGGGGTCCGTCGATCGACTGGGGGCTGGTGCTGATTCGACAGGTGC # Right flank : CACTTCTTGAGCTGGGATTTTACAAGCCCCGCCCCCATTCCTCCTTCACTTCTCCCGCCACACCCCCGCCGCCGTGCACACCGACGGCAGCAAAACCCCAGCCGCCAAGGCGTACCCCGCCCCATTCGGGTGGAAGCGGTCACCACTGAACAGGTCCTGCGGCCGACTCAGGAAATGCGGCGACAACAACGCCGCCAACGGCACCGACGCCGCCTCCGTCCGGCTCAGCTCACGAGCCTGGGCACGCGCCAGAGCCAAGCTCCACCGCCGAGCGACAGTCCGCAGCGGCTGTGGGATCGGCATGATCGCCCCCAAGTCCGGGCACGTCCCCACCACCACGGCGGTCCCCGCGTCCAACAGCCGCCGCGCCTGGGCGGCCAGCAGCGCGGCCGAGGTGGGGATGCTCAACCGCGCCGTCACGTCGTTGCCGCCGACGATGATCACCGCGACGTCGGGTGGGGTGGTGAGGGCGTCGTCGACCTGGGGGACGAGGTCGGGGG # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAGCAGCCCCGCGTGTGCGGGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 1762-1065 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOL01000085.1 Actinokineospora pegani strain TRM 65233 849, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1761 37 100.0 36 ..................................... GGGTACGAGCCCGGCGGCATGGTGGTCCGGGCGGCG 1688 37 100.0 36 ..................................... TACGGCAACCGACTCGTTTACGCGAAGGGCTCGTGG 1615 37 100.0 36 ..................................... TTCTTGATGACCCGCGGGGACATGCGGCCCGGCCAG 1542 37 100.0 35 ..................................... CCTCTGGATGTCCGCCTCGAGTACGAGCATTTCGG 1470 37 97.3 39 ............T........................ TTCGTCCGCCCTCACGAGCTGCCGTACGTGGTGGACCGG 1394 37 100.0 39 ..................................... CCCAAGGGGCGCATGGACGTGCCCGCGGTGCTGTCCGCG 1318 37 100.0 35 ..................................... CCCTGGGACTACGTCATCGCCCGAGCACGGGGCGA 1246 37 94.6 35 ......................G....A......... TACGTGTGACAGGTCGAGATGGCTGCGGAATCAGG 1174 37 97.3 36 ..G.................................. GGCTACCCGACCGTGGCCGGAATCTGCGGAGCGCAC 1101 37 94.6 0 ...............G.........A........... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 98.4 36 GCAGCGCTGGCCCTCCGGGACCAGCGAGGATCGCAAC # Left flank : GCGGTCTTGCAGAGGCAGAGGAGCACGCCCTTAACCCCGGCGACGGTCAACGCCTCGCGACAGGTCTCGTGTAGTCAGAAGTGCAGTTTTACGCCCGGCCTCGTTCGGCCGCGGGTCGTATCAGCCGGTGCAGTCACCGAAGGCCACGATGTTCCTCAGGTGGGGTGGGACCTCGTCGATGGCCAGCGCGGTCATCGCAGCGCACGGCGGCACAGGAGAGTTCGAATCGGTGATCTCTCGGCAGGTGATCTTTCACCTTCGTTTCATCATGACCACGTGTAGCTGTTAGCGGAGCCCAGTTCGTTCCTTGGTGCGTCTTCACTTCAACCTCATCTGGTGTGTTGACGGCTTGGAGACACTGTCGTCCTCGGGTTCGGAACCCCCAGCGCCGTACGACACGCCGGGACGTTCCGAACCTCGGGGTTGCGTGTCGTCCCAGCCAATGGGAACCCGATGGTGTGCCCGGCTGTTGGTCACCGCATATAGCCTGTTCAAGCAGG # Right flank : GATGGGACTCCACAACCGCGTCGGGCGCAGGCTGGCGGCAATGAACTGATTTGAAACTGCCCGGTTTCGTGATGTGCGTGTGGCTGCTCAGATGATGAGGGGGTCATGGTGGCCTGGGTTGATTGCGGCGCCGAGGTGTCTTGTTGTGGTGAAAGTTCCTTTGGTGAGTTGGTAGATGCGGATGGAGTCGAGGTGGGGGTCGATGAGGTCGGTGAGGGTGGCTTCGAGGCGGAGGCGTTGGGTGGGGTCGCAGACGACTTCGAATACGGATTGTTGGACTCGGTGTCCGATTCCTTCGCAAGCTTTGGCTACTTTGCGGAGTCGGCGTTGGCCTGCGGGAGTGGTGGTGTCGACGTCGTAGGTGACGAGGAGTTCCATCAGGTGAGCGTCCAGGGTTGGTAGGTGTCGGTGTCGCCGCGGAGGTGTCGGGCGAGGAGGCGGGCTTGGATGAGGGGGAGTAGGGCGGCGGGGATGTCGCGGTCGAGGGTGGCGTGGTGCCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGCCCTCCGGGACCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.50,-15.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5554-4713 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOL01000085.1 Actinokineospora pegani strain TRM 65233 849, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5553 37 100.0 37 ..................................... TACTGAGTTACTGAGGTCAGTATGCGTGCGGATCAGG 5479 37 100.0 36 ..................................... TGTCGAGTGATCGGGACGCGCCGTGGCGTGGCGGTG 5406 37 100.0 35 ..................................... GCCGGCAAGCACCCGCTGCCGAACGTGGCAGCCTC 5334 37 100.0 36 ..................................... CGCCCGGACAACTACACCGACGCGCTGGCGGGCTAC 5261 37 100.0 37 ..................................... CTGCGCGGTGACGAGACCACCGCCACGCTGTTCAACC 5187 37 100.0 35 ..................................... TCCCCCAGTGGCGCGAAGGCGTTCGCCGCGGCCCA 5115 37 100.0 35 ..................................... CGTGTGGGCTGGCAGATCGCGAACACCCTCAACGA 5043 37 97.3 36 .................................T... CCTGTCCGACCTCGACGATCAGGACTCCCGATGAGC 4970 37 97.3 37 ...................G................. CACGCGATGATCGACACCCAGGACCGCATCAACCTGG 4896 37 97.3 36 ...............T..................... TGCGTGAGCCTTCCGGGGTCGGTCGGCTTGCCGGGG 4823 37 97.3 37 ...................G................. TCCTCGTAGGCCCGCGACCCGAGCTGCAGCGACTTGG 4749 37 91.9 0 ..............A....G..G.............. | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 98.4 36 GCAGCGCTGGCCCTCCGGGACCAGCGAGGATCGCAAC # Left flank : AGCCCTGCTCGACGATCGCGAATTTGAGTTGATCGGTCACCCCCGCCGGGGCAGCGAAAGAACCTGAAAGGCGCTAAATTTGTGGGGCGGGGACTGGCTTGCACCGCCAGCCCGAACTATTCAAGGCATCGATCTGCGGAATGAGGACATCCTGGCCAAGGGTGCAGTTAATCGCATTGTAGTGCGTTTGGGCCTCGTTGGTTATCTTCTCCGTAGGTCCTTACTCCACGTTTGCCTCATCTGACGCTTTTACTCGTCATTCTTCATCTGGGTACGGATGCACGCACTGCTGTTAGGGGCCGAGTTCGCGTTGTAGTGCGCCTTGGACTCACTCCCAGCGCGTCGACTGCTTGGAGCCGTTGTCAACGTCAGGTTCGGAACCCCCAGCGTCGCACGACACGCCGGGACGTTCCGAACCTCGGGGGCGCGTGTCATCCCAGTTAGTGGGAATGTGATGGCGTATCGACTACCGGTCATCGCATATAGCCTGTTCAAGCAGG # Right flank : CGTCGCTGCCTGTGGTGGGCATCGGCAGCGTCTGCCGCCGCCCACACACCACCGAGGTCGACCACGTCGTCCACTCGTTGACCAACCGCGGCCTGCGCCTGCACACCTTCGGCGCCAAGGTCCTCGGCCTGTCCCGCTACCGCGACGTCATCGTTCCAGTGACTCGGTGGCGTGGAGCCTCGCCGGACGCTACGAACCCGGCTGCGCTCCCGGGCACCGCACCGAGTCCAACTGCCTGCGTTTCGCCCTGGCCTGGCACACCCGCGTCATGACCCGATCGGGGCAGATTCCCGACGCCCCTTGCTCTCCTAGCTGGTTGACGCGTTCATGGAACCACCAATCATCAAAGCGAACGGGGTTCGGGCAATGAACAACACGACCACATCCAGGTTCCCGGGTGTCCTCTACGGATGGGCCGACATGACAGCGGACCACGGCATCTCCAGACTCGAACAACACTGGTCCCTGCTGCGCAGCCTTCGCCAGTCGATGTTCAACAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGCCCTCCGGGACCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.70,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 60300-60512 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOL01000091.1 Actinokineospora pegani strain TRM 65233 859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60300 29 100.0 32 ............................. CGCTCGAAACACAGCGCTACGAGCGTCACGAG 60361 29 100.0 32 ............................. CGCTGGCTATCCAGCATCGACCTTGATTTCCG 60422 29 93.1 32 ..............A.............G GGCGAGGAAACGCCTCTCAAGGCCAACGACCA 60483 29 89.7 0 ...T..........A...A.......... | C [60509] ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTCCTCCCCGCGCAGGCGGGGCTGTTCCC # Left flank : CAGCGCCGCGGGGTCGGGCTCGCAGCGGTTGTACTCGTTCAAGGACGTGCTGGTCCTCAAGGTGGTCAAGCGCCTCCTGGACACGGGCGTGTCACTGCAGAACATCCGGGTCGCGGTGGACCACCTGCGCAAACGCGGGGTTCGGGACCTCGCCCGGATCACTCTGTTCAGCGATGGCACGACGGTCTACGAGTGCACGTCGCCGGAGGAGGTCGTGGACCTGCTGCAGGGCGGGCAGGGCGTCTTCGGGATCGCGGTGGCGGGGGCCATCCGGGAGATCAGCGGGACGATCCACGAGTTCCCGGCCGAGCGGGCGGATGGACTTGAGGTGGACCACGCCTCGGATGACGAGCTGACTCAACGGCGGAACGCTCGGAACGCGGGCTGAGAGGGTTCGCTCGTTCGGGTGGTTTTTGGGATGAGCTGGGCTGGCGCGGCGTGAGGCTCCAAAAGTGATGCTGAAATGGCGTGGCTTGCTGTAAAGGTGCAGGTCAGTAAGT # Right flank : CCGGTGAGCATCGGTGCGAAGTCTTCCCTGTGCGAACGGGGCTGGGTGGAAGGCGGCTCAGGCGTTGGGGAGGGTGTAGGGGGTGGTGGACGTGATCTTCTGGAAGCCCATCCTGGTCAGGATGGGGCGGCTGGGCGGCATGGCGTCCACGTGGAGCCAGCGGACTCCCCGGTCCAGGGCCAGGGCGGCGCGGTGGGAGACCAGGGCTCGGTAGATCCCCCGGGAGCGCCATTCCGGCACCGTCCCCCCTCCCCACAGGCTCGCCCACGGCCTGCCGGGGTAGTACTCGCTGCGGGCGGCGCTGACCGGGGTGCCATCCGCTTCGGCCACCAGCACGTCCAAGCGGTCGGGGGCCGTTTCCAGGGCGTCCAGGAGGCGGTCGCCGAGCCAGGTGAAGGGGGCGTGGAAGGCGGCCTCGTGGACGGCCACCACCTTGGCGATCCCCGCCTCGTCCGTGACCGGGGTCAGGGTGATGCCGGGGGGCGGGGGGACGGGGGCGA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCTCGCGGGGCTGTTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 144516-145692 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOL01000086.1 Actinokineospora pegani strain TRM 65233 850, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 144516 29 96.6 32 ............................G GCGTCCGCCAACCAGGCGTGTACAGCCGTGCC 144577 29 96.6 32 ............................G ACATCGACGATGTAGCGCAGCAGGCCCGCGGC 144638 29 100.0 32 ............................. CGAACGCGCTCGATGTCAGCGGGGTGGGTCAT 144699 29 100.0 32 ............................. AGCTTGTTGCGGATTTATGGGGTGAAAAGACC 144760 29 100.0 32 ............................. CCGGGACGGGCGCGCTTGGGGTCCCACCGGGT 144821 29 100.0 32 ............................. GCGACTGGACCGACGACGAGCGCGCCGCCCTC 144882 29 96.6 32 ............................G AGACCGAGATGGCGCTTGACCCGAGGCAGTGG 144943 29 100.0 32 ............................. CCGGCCTACGCCTCGGCCGACGGGGTGCACCC 145004 29 100.0 33 ............................. CGGCAGCACGTGCTCGTCACCACCGCCACCAAC 145066 29 96.6 32 .............A............... TGCTCGGCCGTGCGCTTGCCGCGAACGGTGTC 145127 29 96.6 32 ............................G TGATCACTGGTGTGGGCGCCTGGTGGGGGTCG 145188 29 100.0 33 ............................. GGCAGAGCCGCCGCCTGCCCCCTGGGCCGTGGA 145250 29 100.0 32 ............................. CAGACCGGCGCACCCGGCGGCCGGGTCACCGT 145311 29 100.0 18 ............................. TCTGCCCACGACGATCAC Deletion [145358] 145358 28 96.6 33 ......................-...... GGTGCGAAGTCGTTCTCCAGGCTGGTGTGACCG 145419 29 93.1 31 .........A..........A........ GTTCGGCGTCGGTTGCGGCGGGGTGTCGGCG 145479 29 100.0 32 ............................. GCTGGCCGGGGACTCGCGCACGGCCGCGTTGA 145540 29 96.6 32 ......T...................... CCGTTCCCCTTCACGGTCTGGGCGGTCTTGCC 145601 29 89.7 33 .C...........TG.............. CGGCGCTATAGCCCCTCGCCTCAGCAGGTGGTC 145663 29 93.1 0 .............T..............G | C [145687] ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.6 31 GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : AGAACCGGCGCCGACAGCGTCGCCTGGCATGGCGACACCCAGGGCCGAGGCGCCCACACGGACACTTTCGTGGCCATCGTCTCGGTGGGGGCACCGAGGGTCCTCGCTCTTCGACCACGCGAGGGCGGTGGCGCTGGGCACCGGATTCCGTTGGGGCATGGGGATTTGCTGGTGATGGGTGGTTCTTGTCAGCGCACTTGGGAACATGCGGTCCCGAAGACTTCCAAGGCGGTGGGGCCCCGCATCAGCATTCAGTTCCGCCCCGCGGGCGTGCGCTGACCTTCGTGATATGCGGCGCTTTTGCTTTGACGTGTGGTCAGCGGCTCACATTGACTGGTTGGCAGGTTCTTGGAAGCTGATCGGAGGCGTTGTGCAGCTTCACATGGACGCGACACGGCGTCCTGTTACACAGCGTAGCCGGTTCGCTACACAACTTGCCGATCCTGCGAGAAGTGATGCTAAACTTGCCTCGGCGCTCACAAACCTGCAGGTCAACAAGA # Right flank : GGCTGGCCGCACGCCGAGCGAGCCGTGCGCACGTCTACCCGCGCAAGCGGCTGTTTCAGGCTCTCCCGCTACCACGACCTCCACGGCCGTCCCACACAAGCGAGACCGATCCATCCCCAACCAGCCCCCACCCCTTGCCCCCACCCCCCGACCCCGTTATCTTGATACCGGATAGCGACAAGCGATAGTCAGGGGTAACCAGATGGATGCCGGGGACGTCGGCCGCCTGCTGTTCGGTCGGCCCAGCAGGTTGCGGTTGGCTTTGTGGATTCACCAGCACGCGGGTCCGCGGTTCTTCCAGTCGGAGCCGCCCAAGACGGTTATCGCGCAGAGTGCTTGTGGGGTCGAGCTGACTCGGTTGGTGGATCTGGGGATGTTGACCGAGCATCGGGAGCCTGCCAATCGGCGGGTGTACTACGAGCGGACGCGCAGTCCGTTGTGGTCGATCATCACCGCGGCGGCGAAGGTGGTCGACCCCGTCGACAAGTAGCGTCGACGGG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //