Array 1 846049-849106 **** Predicted by CRISPRDetect 2.4 *** >NC_002578.1 Thermoplasma acidophilum DSM 1728, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 846049 29 100.0 37 ............................. AGTTCGTTCAGGCTGAGGGATAAGACCGAAAAAAATG 846115 29 100.0 38 ............................. ACGAGTGCCGATGCAATCAAGAACGAAGAGGACTATAA 846182 29 100.0 36 ............................. TCTCACAAGCTTCTACGACCGAGACTGCATCGCCTT 846247 29 100.0 36 ............................. TTCTCTGCAGTCATGGTCAGATTCAGTCATAGCAGA 846312 29 100.0 36 ............................. TTGGAAAGATCCGTAAGGTCTTTCTGCTGCAAATAA 846377 29 100.0 36 ............................. AGCGACACCTGCTGGGTCGGGTTGTACAAGACAACG 846442 29 100.0 36 ............................. TTCCTCCTCGCCATCATCTTCGACTACCGTTCGCTC 846507 29 100.0 36 ............................. GTTTACGGCGATCGAAACTGAAGCAGTCTCACCCTG 846572 29 100.0 36 ............................. AGAAGAGATATATCCGGAACAACTACGGGGCTACTA 846637 29 100.0 36 ............................. ATATATATGAACGAAGTGATATATACCGGAAACCGG 846702 29 100.0 35 ............................. CACGTTGACGGTGAAGTTCTGGACGTCAGTATAAC 846766 29 100.0 37 ............................. TCGGAAATAAAGCGTATGCTTGATGAGGGATGGGTCT 846832 29 100.0 37 ............................. AATGGGGATAACGGCAATTTAGAAGTGGGTTCAACGT 846898 29 100.0 37 ............................. TAGCCACCTTTCCCATCTTTATGGCCAGGAATGAAGA 846964 29 100.0 39 ............................. AAGTACATCGCATTCTCAACTATGGCGAAACCCATGCCG 847032 29 100.0 36 ............................. AGTAGAGAAACTCTTGAGAAACTGCGTTCCGCGAAG 847097 29 100.0 39 ............................. ACGATATCCTCATCGCAGAACCCGACCGATGTGGGCAAG 847165 29 100.0 38 ............................. ATCTGACCAACTCAAACACCACAGGCACACCCTTCAAC 847232 29 100.0 35 ............................. GTACTTCCCCGGTGGCGAGCAATACAGCGGAAACA 847296 29 100.0 37 ............................. AGACGTGGCACCGCTTATCGCCGACCCGCTTCCAGAC 847362 29 100.0 36 ............................. AAAGTCACGCTGTCACCGACGTCCGTTGGGTTCTGG 847427 29 100.0 38 ............................. AATCACCAAAGGAATAGAAGAAACCGCCTCCATTACGG 847494 29 100.0 36 ............................. TAATTGTACGGAGAGGTGCCTCCTGATACCGAAGCA 847559 29 100.0 37 ............................. GATATATTCGGCTGCAACCTTCCTGAACATATCTTTG 847625 29 100.0 37 ............................. AAAATATGGGGTACAAGACCGAAAGAAGGATAAGGGA 847691 29 100.0 37 ............................. AGTTGGTAAAGTTTTTGAAATGGAATACCAGACTAGC 847757 29 100.0 38 ............................. TTTTTGTAGATGTTCTAGATTTGGAGGACTGGATTTAA 847824 29 100.0 39 ............................. ATTTTGATCTGGGCGGATGCTCCGCTGTATGATGATGTT 847892 29 100.0 37 ............................. ATTTATACGGACACGGACAGTTTCTTCGTGGTAAACA 847958 29 100.0 37 ............................. AATGTGCGGAATGCTGACGCCGGCGCTGATATTCCCC 848024 29 100.0 37 ............................. GTTAAGCTAAACTTAAAGACCGATGAACTGGAAATTG 848090 29 100.0 35 ............................. ATGAGTGGCAAATATATCATGAAATCGATGAGTTT 848154 29 100.0 39 ............................. ATTGGAATCACGGTGTCGATCTTAATAACAGATTTGGCG 848222 29 100.0 38 ............................. CCACAAGTGAGATCGGCATAGCCCCTGCATAATAGCTA 848289 29 100.0 35 ............................. CCAGAGCTTCGGCTTCTCAACCTCCGGATACGGGA 848353 29 100.0 37 ............................. GCGAGAATTCAAAGCCATATATATTATCGGAAAGTCT 848419 29 100.0 39 ............................. TTTATGGCTGAAATAACGGGGAATGACCCCAAATATCGT 848487 29 100.0 37 ............................. TACACATTCGGCTCTTCCTTAAGCTCCGCAACGCTGT 848553 29 100.0 37 ............................. AGTCTTCATTGCTTTACCCCCATAAATCAGATCCTCC 848619 29 100.0 38 ............................. CTGGAACGTGATCGACTGCGAATAGCCATATTGATCCG 848686 29 100.0 37 ............................. TTTGTTCAGTTCCTTCTTTGAGATCTCGAAAACTATT 848752 29 100.0 40 ............................. TTCCGCAAGCACTGGGGGATCCTGAATAACAGAAGAGGCG 848821 29 100.0 35 ............................. TGCACGCCTGCCCTGAGATGAATCCTCTTCTTCCT 848885 29 100.0 36 ............................. ACACCTGATCCGACCGAACACCCCTAAAATGAATTA 848950 29 100.0 36 ............................. GTATGATGCCTGGACAGTCTGCCCCTGGTCAAATGT 849015 29 100.0 34 ............................. AGGTTCTGGAGTGGCTGGCTTATCGCGACTGAAT 849078 29 89.7 0 ...........A............A.G.. | ========== ====== ====== ====== ============================= ======================================== ================== 47 29 99.8 37 GTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : AAGCTACGGATGACGTAAATTATTAAATATTCAGTAGCTATATGGGAAATTATGCCCCGGTAGTGTAGTGGCCTATCATACAGGCCTGTCGAGCCTGTGACATGGGTTCAAATCCCGTCCGGGGCGTCCGAATAAAAGTTCAATTTTTTGGTTAAGGTTTTAGAGAAATTCTCTAAGAGGACGTGTGAAAGCCATACATTAATAGACAAAGGTTTCAATGCTAGACTAATGCGAACATAAATGTTCGAATTCTAATGAATTTCTATGAAACTAACTTGGCATTGACTTATAAAAACAGGATACCTTCACATCTTGAGAATTGTACGGGAAAAATCCTAGTTATGCCAAAATAATGGATCTTAAAGAAGCTCTTGTTTGATGGCGTCATCTTAGGAAATGTACAGATCCTTTATATACCAACCCTAAGACCTTAGGTTCTGTACACTTTACGAATCTCGAAAACAAAGATAATATAGTCATGAACTGATTATCTACCTCGG # Right flank : GTTCCTTCGAACTATAGATTCTTCGCGAAACTCTCATCTAACTGATAAACATGTATCACTTCACTTTAACGATTGAAGCTATTATATCATAATTCACCTCGATCCAATGCGATAGATCCAGTTAGGCATTTCCTTACAATAATAAACTTTGAAAACTTATGTATGGCAGAATCATCTTAAAGGTTAAACTCTTTGACGATATTCTAGAGAAGAAATGGAAGAACTGGGCGATCTCTGTAAAAGCATCCTCATCCACATATATAAGTACGGCCCGGACAGCCCCAAATACATGTCCCACAGGTTATTGGGAGCCAGCGGCTGGGCCCCCAAATATGACCAGGAAGAACTGAAGCGGGCCTGCAAGAAGATGGAATCGATGAGGCTCCTGACCATCTTCAATGGCCCGCTCAAACGTTCGCCGACCTCATCCGTGAAGCCCTGGATCAAGATCAAGGCCAGGGAGATCAACTACAAGCCGGCAGGCATATACTACGACCTCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //