Array 1 318971-317664 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXS01000015.1 Akkermansia muciniphila isolate MG2_JASPER.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 318970 33 100.0 34 ................................. TTAATTTGCTGAGCACGACGGAGGTGACTTCTTA 318903 33 100.0 34 ................................. ACTTCCTGGGACAGGCAGATCACGGGGATGCTCG 318836 33 100.0 35 ................................. GATTTTTTGTGTAACAATGTAATTGTGGTCATCAT 318768 33 100.0 34 ................................. ATCACCACACCAACTTTCTATGCCGGATTAACTC 318701 33 100.0 34 ................................. GTTGTTGCGGTCGGCCACATCATCCCCGGCATCC 318634 33 100.0 35 ................................. AGGGGACGGAGCGTTGTTCCACGGAGTTTCCCCTT 318566 33 100.0 34 ................................. TTGGACAGGCTCATGTCAATAGTCCTCCATGTTG 318499 33 100.0 34 ................................. TTGAGGGTTTGAATGTTGATTTTGGCGGGGATCC 318432 33 100.0 34 ................................. TTCTCGGATATATCGTCTTTGATACCCGCACACA 318365 33 100.0 34 ................................. CACGGCATTTGCCGCATAATGTAATCTTTGCACA 318298 33 100.0 34 ................................. GGCTTGGAGCCTCCGCTTCCCATTATCGCCGATG 318231 33 100.0 34 ................................. CCTCTCTTTTTAGGCGGAAAGGCCACGAACAGCG 318164 33 100.0 34 ................................. TCCTACCGTATGGAGACAGTGGAATCGGAATCCG 318097 33 100.0 34 ................................. CGTGTCCTGGTAGGTCACCGGAAGCGTGTCAAAA 318030 33 100.0 34 ................................. CGAGTATGCCTCCACCAGCGCCCGCGAAAAGATG 317963 33 100.0 34 ................................. TCGAATGTCCGGGACACAGCCCGCAACGGATATG 317896 33 100.0 33 ................................. TCTTTGTTGAGCGGGTACCATGAGCCTGTGCTG 317830 33 100.0 34 ................................. CTCGAACGTGCATCCGTAATTGGCAAGGCACCAG 317763 33 100.0 34 ................................. CAGGTGCGGGTGCAGAAAGATACGGAGGGCGCCG 317696 33 97.0 0 ..........................C...... | ========== ====== ====== ====== ================================= =================================== ================== 20 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAATAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTTCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : ATGACGAGTGCAAGCTTCGAGAAGATGCCTCCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTTCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCCTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGTTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATATGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 327927-327442 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXS01000015.1 Akkermansia muciniphila isolate MG2_JASPER.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 327926 31 100.0 34 ............................... TTACAAAACTGTTTTATGGATACAAAAATATATA 327861 31 100.0 34 ............................... CTTTACAACCCTTATAGGTTATTATTTCCCTATG 327796 31 100.0 33 ............................... GGCATTCAGGCAGTCGGACGGTTCAACTCCGGA 327732 31 100.0 34 ............................... GGCTAAGTGTTGAGGGTTCCCGTCAACCAGCCGG 327667 31 100.0 34 ............................... TGGAGGGAGTGAGTATGAAAGGGAAGGATTTGAG 327602 31 100.0 34 ............................... GACCAACAACGTACCCGGCACGTGGTGCATCGGC 327537 31 100.0 34 ............................... CTTTTTCCGGCTCCTTTCCGCAATGCGCATCAGG 327472 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== ================================== ================== 8 31 98.8 34 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : CGCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTTTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCTCCTCTTCTTTTGTGGAAAAGAGAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCAGGCTTTTTAACGCATGAAAAGCTTCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTAAGGCCTGGAGTCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGG # Right flank : GTCGTAGATTGAACGGCCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //