Array 1 17115-15070 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIZB01000033.1 Actinomyces wuliandei strain 340 NODE_45_length_296426_cov_216.998077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17114 29 96.6 32 ............................C CGCGTCCACCACCACCGGGGACGGGACGCTCT 17053 29 96.6 32 ............................C CAACGATCCGAGTGGAGGGGCAGACGGTCTAT 16992 29 96.6 32 ............................A CACCGATCGCCTCAATAATTGACGCCATTGCC 16931 29 100.0 32 ............................. CGAGCACAACAGCCCGCCCCGCACAGACACGT 16870 29 96.6 32 ............................C TTTTACCGGGTCATCGAGGTCTAGGCGCCAGT 16809 29 96.6 32 ............................C GCGCGCATAGCAGACATCGCAGACGGCGCGAG 16748 29 100.0 33 ............................. TGGGCTGCCCCGTCCTGGAGCAGCCTCGTCAGC 16686 29 96.6 32 ............................C GTCATCGCCGGGGCCGCTTAGAAGCACGGCTG 16625 29 100.0 32 ............................. AAAAAGAGTGTTGTACCGACGGGCAGTGACCG 16564 29 100.0 32 ............................. CCGGTGGGCGAGGACCATGCCCATGCCGGTGC 16503 29 100.0 32 ............................. CCCTACCAGCAGCAGATCCACGACTTCTTGGT 16442 29 100.0 32 ............................. CGCCGCATCATCCTCAGAAAGGCCGACCGCAG 16381 29 96.6 32 ............................C TCTCGTGCTACTGCGGTGCACAGGATGCCGGG 16320 29 96.6 32 ............................C TGGGCGGCTAAGTTCTTTTCCTTCACGGAAAG 16259 29 100.0 32 ............................. GACCCGAGGAACCAGCCGAAAGGGGCGCACCA 16198 29 100.0 33 ............................. GACTGGGTGTTCCGGGGAGGGTGCCGGAGGAAG 16136 29 96.6 32 ............................C CCGGCGGTGCGCCTCCCGTCGGGGGTCTCGAC 16075 29 96.6 32 ............................C CACACAGAGACACCCCCCATCAGCGAGGCCCC 16014 29 100.0 32 ............................. CATGACCAGCAACGTGCCGGGGCCGCGGCGCG 15953 29 100.0 32 ............................. CACGCCCCGCCTCCTCGTGACCTCCCTCCCCC 15892 29 96.6 32 ............................C ATCGTCGTGGTCTCTGTGGTCACCTGGGCGAT 15831 29 100.0 33 ............................. GGCGTGGGCAGGGACGTTGCCGACGAGCTGCGC 15769 29 96.6 32 ............................T CCTGCTCAGCGCAGCGACCCGTAGGGACCACA 15708 29 100.0 32 ............................. AGGCGCAGCTGGCCGAGCTCGTGGAGGCGCTG 15647 29 96.6 32 ............................T GGAGGCTCGGTGGGGGCGGGGGCGCCGGTGGT 15586 29 100.0 32 ............................. CCGCACCGTCCGAGACGACGGGCTTCAGGTAC 15525 29 96.6 32 ............................A AAATCAGCTGCGAGGGGGACGCGCTACGCAGG 15464 29 100.0 32 ............................. TACTGTGCCCGGCCAGCCGGTCGATCTGCTCG 15403 29 100.0 32 ............................. GCAGTCCAGAAGATGCCCTGGCTGCGCCCTGA 15342 29 100.0 32 ............................. GTGACGCGCTCGACGACGGTGTGCTCGCCGTC 15281 29 100.0 32 ............................. GTCTCCGCTACCGGCGTCCCTGCCTCTCGGCG 15220 29 96.6 32 ............................C GGAGGAGAAGGATGATCACTGTGGAGGAGGCT 15159 29 96.6 32 ............................C AGGGTCCTCACGCTCGGTACACGCACGGCTCA 15098 29 89.7 0 ..........................TAT | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.1 32 GTTGACCCCGCACGCGCGGGGATGATCCG # Left flank : GGTCATCGCTGGGGGCGTCAACTACACCGTGCTGAGTGACGAGGCGGAGGGCGGCGATCCCGGGTGGTAGTGATTGTGCTGTCGGCTGCACCAGCGGGGCTGCGAGGGGCGCTGACCCGATGGCTGCTGGAGGTGGCTCCCGGGGTGTTCGTCGGGCACCTGTCCGCCAGGGTCCGCGAGCAGGTGTGGGAACTGGTCGAGGCCAACATCGGTGACGGGCGTGCCCTGCTGGCCTACTCGGCACGCAACGAGCAGCGCTTTGCAGTGGTGTCCCTGGGGCACGAGCGTGACCCTGTGAACGTGGAGGGCTGCCTGGTGATGCAGGCGCCTTACAAGGATGTGAAAGAGCAGGCTGCCCTTCCTGGTGCTGTCAAGGCTCCGAAGGAGTCCTGGTCAGTCGCCGCCCGACGACGTCGCTACCGCAACGCTACCGAGCGGGCCCTAGGTCAGCAGTGAAGGCATATGGCCTGGTTGCGTGGTATCGTCGCAGGTCAGGAAGT # Right flank : CAGTCACGGCGACGTCTGTGCGTGTCGGCTGGGCGTTGGTGGGGTGCGTACTCCGTTCCGGGGCCTTTGTGTGTTTAGCCGGGCCGGGTACGGCTAGTTGGGGAGACGTATTGTAGGCAGTTTCAGCTTGTAGGCAGTTTCAGCCTTTCTAATAACCGCCTCAGTTGGCCCCGTCACCCTCCTGAGCGTGCTGATGACCGTCGTGCTGTCCCCGCTGATGCGCCCGATGACGTACAGGCCCGGCCAGTGTCCCACTGAGGAGTAGGCCAGGACGAGTACCTTGTTGGGTGTGTACCAGGCGATGTCGCCAGCCTGGGGCGCGGCGGCTGACATCCCGGTCACGTCCAGCGCCTCGGGCAGGGCGGCCAGGATCTCCTGCCCGGCGTAGTCGGAGAAGGACACTGTGACGGGCAGCTGGCGCAGCAGGGAGCGGCTGGCTGGGGAGTCGTCCAGGGTGGCTGCGAGGAGGGAGCCGCCCAGGGTGATGGTAATGGGGTGTG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 944-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIZB01000042.1 Actinomyces wuliandei strain 340 NODE_61_length_172074_cov_238.587463, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 943 29 96.6 32 ............................C CCCGGGTCCTCGGCGGGGGCTGGTGCCGGGGG 882 29 96.6 32 ............................C GTCCTCACGACACCATGGCCCTGGTGACCCTT 821 29 96.6 32 ............................C GTAGTTTTCGAGGTCGAAGACGCTCGGGTGCT 760 29 100.0 32 ............................. ATGTGAGAGGCCTCGCGACACCCTCGCGACGG 699 29 96.6 32 ............................T GATGTGGGTGTCGTCGTCGTCGTCCCAGGCTT 638 29 100.0 32 ............................. ATTTTCCGGTTCCCGACTACCGCACCCGCTCA 577 29 100.0 32 ............................. GTGAGACGGGTATCACGTCGCCGGATCGCCGA 516 29 96.6 32 ............................C CGCAACCCAGTGCCACCCGTCAGCGTCCGGCA 455 29 100.0 32 ............................. AGCGGGAAGGACGACAGCGAGACGGAGCGGCT 394 29 100.0 32 ............................. TCCGGCCGGCTCCAGGAGCGTCCTGCCAGCCG 333 29 100.0 32 ............................. GCCCGCCGGGTGAAGGTGTAGGACACCACTCC 272 29 100.0 33 ............................. TCGTCGAACGAGACTGTCCCGTCCTGCATCGCA 210 29 96.6 32 ............................C CCTGTCCCTGGCATCAGCCCACTGCCTGTCGT 149 29 100.0 32 ............................. GAGTATTACCGCCGCGCTGTCCGATTGGTCCG 88 29 96.6 32 ............................C CCAGGGCGAGCCCGGGGCACCGTTCACCTACG 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.1 32 GTGTTCCCCGCATACGCGGGGATGAGCCG # Left flank : CCGGACATGGGCGACCTGGTGCTGTGGTCTGAACTGGGCACGGTAAGCAGTGGCGTTAACTACGCGGAGGCCGAGCAGGAATGATGACCTTAGTCCTTAGTGCCTGCCCGGCAGGACTTCGAGGCGACCTGACCAAGTGGCTGCTGGAGATCAGCCCCGGCGTGTTCGTTGGGCAGGTGAGTGCTCGCGTGCGTGACTTGCTGTGGGAAAGGACTGTGGCGCTGTGCAAGGACGGTCGGGCTCTGCTGATCTTCAGCGCGGCCACGGAACAGGGCTTCGCCTACCGGACCCACAACCACGAGTGGGAACCGGTGGACTGCGACGGAGTGCTGCTGCTCCGCAGGCCAGTCCAGCAGAAGAGGCAGGTGAGACGCACAGGCTGGAGCACCGCCCGAGCCCAGCAGCGCTCTCGGCGCCCACGGTGGGCAGCACCACGCCCCGACACAGCCAAGTCGTACCAGAACGAGCTGGATCCAGGCTAAACTCCCAGGTCAAGAAGT # Right flank : C # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8-1565 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIZB01000045.1 Actinomyces wuliandei strain 340 NODE_89_length_161621_cov_226.209473, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 ............................. GGTTTTGTGTGGTGGTGGGTGTGGTGTGGCCC 69 29 96.6 32 ............................G CTGGGGTAGGGGCTGTCCGGGTCGGCGGCCTG 130 29 96.6 32 ............................G CAGCCACCTCCACCGGTCGGTCAGCTCCATGG 191 29 100.0 32 ............................. TGGGTCAATGGATGAGATGACGATCCCGCGAT 252 29 96.6 32 ............................G GGTTCACCATCGAGAGGCTCATGACCGGACTC 313 29 100.0 32 ............................. AACGTGGTGTCTCCCGCGTTCCGGGGGATTGC 374 29 96.6 32 .......T..................... TGGGTCTACACCCGGTCCAGCCTGGTCCATGA 435 29 96.6 32 ............................T CGACCAGCGGGCGGGCCTGCCTGACCAGCTCG 496 29 96.6 32 ............................G CAGCCGCTCCACCCATGAGTGGAGCACTGTGG 557 29 96.6 32 ............................A AACCGGCTGGGCGCTGAATCTGCTCAGACCGC 618 29 96.6 32 ............................G TAGTAGCTGCCGTACAGGGGGGTCTCGACGAT 679 29 100.0 32 ............................. CCGCCCACCGCCGCACCGGCGTCGCCCTGGCC 740 29 96.6 32 ............................G CACATGGAGGTGAGGTCGGACACTGCCCCGAG 801 29 96.6 32 ............................T TGAGGCCATCGCCTTGCGGACACGGTTCCCGA 862 29 96.6 32 ............................G CGGATGGGCGTGTATTTCGCGTCGTCCGGTGT 923 29 96.6 32 ............................A AATGTCCCCAGGCACACGGCGGCGACCTTCCA 984 29 100.0 32 ............................. CGGCTGTGCCCGCCGCTTGGGCTGATCCTGGA 1045 29 100.0 32 ............................. ACTGCGTGGACCACCATCACCACGTTCCTCAG 1106 29 96.6 32 ............................G GGCCTGACCTACGACGACGTCGCCGCCCTCCT 1167 29 100.0 32 ............................. GCCTACCTCACCCTCGGCCCGCCACGAGGCCG 1228 29 96.6 32 ............................G TCGACGTCGAAGGTCACGACGGCCCCGTCAGG 1289 29 96.6 33 ..........................G.. TGTTTGAGCACCAAAAGCCGTCATTGGCAGCCC 1351 29 100.0 32 ............................. CAGCCACCGCGCCCAAGCCCGGCACACAGAGT 1412 29 100.0 32 ............................. CCGCTGCCGTAGGTACGTCTCGACCCGGCCCT 1473 29 100.0 32 ............................. GATGCGGCGCCGCCACCCCCTCCCTACGGGGG 1534 29 86.2 0 .........T.....T.........A..A | C,A,A [1539,1553,1557] ========== ====== ====== ====== ============================= ================================= ================== 26 29 97.5 32 GTGTTCCCCGCATACGCGGGGATGAGCCC # Left flank : GGGCCGCG # Right flank : AAGCGCCCTTATGGCGCGCAGGAACAACAGCCTCTGAGCGTCTACGCGCACCCGTCAGCCGTGGGCATCCACCCACTATCGGGCTGGCAGCAGCCTGCGTGCTACGTGGGCGATGCGCTGCATGGCTCCCTGCGGCGCTACCCTCGACAGCAGGTCACGACAGAGAACGCTGCAAGAACTGCCTCGCTCAGATCCGGGTCCCAGCGGGAACGGTTCCCGGCGAACCCTCCTCCCTCACTACGGCGTCCCCGGTCGCCACCACACCAGCGCCAAAGGTCCAGTCGCCCTCCACGGTCAACGAGCTCGCCCCGCGCACGGAGGGGACGCCCTCAGGGAAGCGGGCCTCAAAGTCCCGGATGGTCTTGTAGTAGCGGGGGTCCAGCACCACCGTGCAGGCCTCCTGCGGCACCTGCACCAGCAGGCCGTCCTCGTCAACCTCGTAGACGTCGGAGCGCAGTAGGAACAGGTCGTTAGTGGTCTTGACCGGGAGGAACCTGCTG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //