Array 1 14475-16359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWE010000002.1 Streptococcus thermophilus strain CF1_14 NODE_2_length_193730_cov_168.381727, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 14475 36 100.0 31 .................................... TCAGGAATCTCATTGAAACCAACTTCAAGAC 14542 36 100.0 30 .................................... ATGGTATCATAGGAAAACAAAAAAAGACTA 14608 36 100.0 31 .................................... TTTTAAATAATTTAAATAATTGTTGAAAATA 14675 36 100.0 30 .................................... AATCAAGTTAAAGGTTCATTCTCTAATGCA 14741 36 100.0 30 .................................... CAACTTGGGCGGGTTTGATTGAAAAAAAGA 14807 36 100.0 30 .................................... TCGTATAAATTATTACGATTCTACTGGTAA 14873 36 100.0 30 .................................... TAAAAAGCAGGACTTCACACCGCAATCGGT 14939 36 100.0 30 .................................... AGCTGTTCCTTCTTGAACATATCATAATAA 15005 36 100.0 30 .................................... ATTCTAACTTGCTACCAGCAATGCAAGATA 15071 36 100.0 30 .................................... CCAACTTTAGTCTATCAATTAGTGATTACT 15137 36 100.0 30 .................................... GCCAAAACAGTGTTACCGTCAGCGAGACCC 15203 36 100.0 30 .................................... CTCTAAAGGCAAAGAAAGAGATTGGCGAGG 15269 36 100.0 30 .................................... ATCATTTCTAGTTTAGGGTTATTAAAGGCA 15335 36 100.0 30 .................................... TAAATGGATAGTTTCCATTGGCTACATTAA 15401 36 100.0 30 .................................... TGTTATCGTTGTTTCCTTGTGGTGCGTCTC 15467 36 100.0 30 .................................... CTTTTTGTTCCCACCTTTGACCATATCAGA 15533 36 100.0 30 .................................... TGGAGTCCCGGAAATCTAGACATTGGTAGT 15599 36 100.0 30 .................................... AGAAACACTTTTTGAAATTAAAACAAAAAG 15665 36 100.0 30 .................................... TTATTCTTGGAATTATTACAGACCCTACTA 15731 36 100.0 30 .................................... GCTTTCATTATATCACTTACTCATAAATCT 15797 36 100.0 29 .................................... TTTTCGCAAAGTAAGCGAAGCTCTACGTG 15862 36 100.0 30 .................................... TAATCACCCCTTTTTCTAGCTCTTGATTGA 15928 36 100.0 30 .................................... AAGTTGATCGTATCTATTTAGAATATCGCA 15994 36 100.0 30 .................................... CATAGTATAGCCGTCTTCTTTGATTGATTG 16060 36 100.0 30 .................................... ATTCACTTTGACAGATACTAATGCTACATC 16126 36 100.0 30 .................................... CAAGCAGTGTAAAGGTGGTTTAAATGTTAA 16192 36 100.0 30 .................................... CCATGGGTGCTAAAGGTGATGACTACCGCT 16258 36 100.0 30 .................................... AAATGAACAGACAAGAAGCAACAGAAATTG 16324 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTACGATATTGAGTTTATGTATGAAAGGGTAAAGAAACACTATCCAAGTAATAATTTTCCAATGAGAGAAGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTATTAACAAAAATGACGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTAAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAATAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 33626-31281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWE010000001.1 Streptococcus thermophilus strain CF1_14 NODE_1_length_203892_cov_178.082350, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33625 36 100.0 30 .................................... GGTTGACCCAAAAACCCAACAACTTATTAA 33559 36 100.0 30 .................................... TTAATTGTACTGCCGAACCGCTTAATTAAT 33493 36 100.0 30 .................................... GAAAAGAAATCGCGATTTCTATATTACCCT 33427 36 100.0 30 .................................... TAAATCCACTGACCAATACTTATGCAAGGT 33361 36 100.0 30 .................................... TGGTTTATATAGAAAACGGCAACTTGGATA 33295 36 100.0 30 .................................... CCAAACAATTACTGTTAGACATGCTGATGA 33229 36 100.0 30 .................................... ATGTTATTCTTTTGATTCTTTTGAAGTTCT 33163 36 100.0 30 .................................... GGCAAGTTCAGGTGGAGCTGGAGGTCATGT 33097 36 100.0 30 .................................... TTTAATAACAACTATCAAGAACAAGGTCAT 33031 36 100.0 29 .................................... TTTTTCTGCTCTTGATGAAATGGGACATC 32966 36 100.0 30 .................................... TAGTTTTATGTATTTGTGGGGTTTCGGAAT 32900 36 100.0 30 .................................... ACCACGACATAGTTCTCTTGTTTGTCCTTT 32834 36 100.0 30 .................................... CGCTATCTCGGACGCCAAAATCAAGGAAAG 32768 36 100.0 30 .................................... AGAGGGTTGGCTTAAAACGGTAGCTAGTAT 32702 36 100.0 30 .................................... TGATGGCATTAATAAACTGATTTCCGATTT 32636 36 100.0 30 .................................... ATCAAGTTTGTTTGCATCGCTAATCCACTT 32570 36 100.0 30 .................................... GGAATTAAGCAAGAAAGAGCATATTGACGA 32504 36 100.0 30 .................................... TTCAGGTGTCTTTTCTGCCTTCGCTGAATA 32438 36 100.0 30 .................................... CAAGTCAAGACCACATTATCAAACTAGACA 32372 36 100.0 30 .................................... GTTGATTATGCGTACCATTAATAACTTTAT 32306 36 100.0 30 .................................... ACCTCTATAGGAAAATTCTTCTCAGATACG 32240 36 100.0 30 .................................... AAAGTACTCAAAGGAGAAAAAACTCAAAGT 32174 36 100.0 30 .................................... ATCAAGGTTGTTAAATTCAAAAGCAACCGT 32108 36 100.0 30 .................................... CGCTATCTCGGACGCCAAAATCAAGGAAAG 32042 36 100.0 30 .................................... AGCTAGTGCCTGAGCCTTGCCAATAAGGGA 31976 36 100.0 30 .................................... GCTACGACCTTCATTTTCTTGTAAATATGA 31910 36 100.0 30 .................................... TAGAGGTAATGATGGTATTGCAGGTAAGGA 31844 36 100.0 30 .................................... CAAGGATGGAGGCGTTTGAGACAAGTTTGT 31778 36 100.0 30 .................................... TATCTTATTTATCTATTTCATTGAGTTTGG 31712 36 100.0 30 .................................... TGCAAAAGTAGACTATGTTCTTGACTTAGT 31646 36 100.0 30 .................................... CTGAAGCAGTAGAGAACTCTACTTGGAACT 31580 36 100.0 30 .................................... CATTTGATGGGAATTTAAGTCAGCTTGGTT 31514 36 100.0 30 .................................... TTGAGAGTAGATGACACGATTCAATTCTAT 31448 36 100.0 30 .................................... CCTTAATGCCAATGGTATTTTGAAGATTAA 31382 36 100.0 30 .................................... AATTACAAAAGTCGAGTTGGCTGAAAAAAT 31316 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATGATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //