Array 1 1275-3092 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAKK01000020.1 Neisseria meningitidis strain Neisseria meningitidis isolate 23002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1275 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 1341 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 1407 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 1473 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 1539 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 1605 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 1671 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1737 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1803 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 1869 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 1935 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 2001 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 2067 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 2133 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 2199 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGGAAAAAATAC 2265 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 2331 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 2397 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 2463 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 2529 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 2595 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 2661 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGGAAAAAATAC 2727 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 2793 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 2859 36 100.0 30 .................................... AAGCCTTTTTTGAACTCGCTGTTCATGAGC 2925 36 100.0 30 .................................... CTTTTCCGGCAGAATAGGCGAGCGCGTCGC 2991 36 100.0 30 .................................... GGTTCGGTTTTCTGTAACGCCATATCGCCA 3057 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //