Array 1 6576-7002 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFE01000012.1 Photobacterium phosphoreum strain AK-3 CFSAN046815_c_P60_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6576 28 96.4 32 ...........T................ ACGCTCTTTTTATATTTAAGCGCGTAAATCTT 6636 28 96.4 32 ....G....................... TCGCGGTTACAGCCGCTATATTCATTAATATT 6696 28 100.0 32 ............................ CGCGCTAATGGTGTTTCTACTTACATCATTAA 6756 28 100.0 32 ............................ ATGCGTGACGATTAATTTTGTAAATTGTTCTT 6816 28 96.4 32 ....................T....... ATGATAGCGGCTGTCGCTGTTAGTGTTTTTAA 6876 28 96.4 33 ............G............... TGCCGTCTAGGTAGTTGAGACTATGCCTAGGGG 6937 28 82.1 10 .A......T..A....A.T......... AGGCTTGGAA Deletion [6975] 6975 27 67.9 0 .A..G...-.CA...AA.......C..G | G [6997] ========== ====== ====== ====== ============================ ================================= ================== 8 28 92.0 29 GTGAACAGCCGCATAGGCAGCTAAGAAA # Left flank : TACTTATATGAAAAAAGAAGGATTTTTCGATATATCTCAAATAACTGAAGTGCCTTGTGATGTTAATGAACTTCGATTCGTTAGAAATTCAGCGATAGATAAAAGCTTTTTGAAATCAAAAAATAAGCGATTGAAACGTAGTGAAAGAAGGGCAAGAGAAGCAAATCGAGAATACAATCCAGTAGCAAGAGAAGATCGCATTTTTGACCACTTTCATAGTATCCCTATGTCCAGTAAAGGCACTGAACGTGACTTTGTGTTACAGATACAGAAAAAAACGTGTGATATCTCTCGAATGGATCATCAATTTAATAGTTATGGGTTTGCAACTAATGATAAATGGCTTGGTTCTGTACCTGACTTACGAGATACCCTTTTATTTTGATTGATAATAAATTTACTATTAATCAATCTGTTACGAGGGATTGTTTTTAAATGGTATTTTTGTGTTATTTGATATAGTCCTTTGATTATTTAAGATATATCGACTATTTTTAACA # Right flank : GCAGATAATAGTGATAATGAGCCATTCAATTAATGTTGAGTGGCTCTTTTTTTTGTGTTTGTTGTGACTAGTTTTTGGACAGAAATTGGTTTGGTTCTTTACTCTACTTAGCTCGTAGATATTAGGAAAAGTATGGGTACCGCAGTCTTAAGCAGTGAGTAACAATTGGCTAAAATGTGAAGCGGAACCGAGCCAACTTTTACAAATCCGACTTTAAGGCCTTATGATACGGGCTGATATCACGAAAGATTCAAGTCGATACAGCATTTTTTATACTTTTTACCACTACCACAACTGCATGGGTCATTACGTCCCAGTTTACCTGCTTTTCGAATTCTAGATTTTTTTAAATTACTTGCGATCTCGTTTAACCTATCCAATTCCAAGCTTGGGATTTCATCTATTGAGATATCACTCCATTCTACCTTTTCGAGTGTTAATTCATCAGAATAAAATAATTCGATTATCAATCTAGTGGTATCATTCACAGCGAGCATGGC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACAGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1051-1258 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFE01000021.1 Photobacterium phosphoreum strain AK-3 CFSAN046815_c_P60_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 1051 27 100.0 34 ........................... ATCATAAATCGACCTTTTAAATGGGGTGAGTTGT 1112 27 100.0 33 ........................... TTTGTCACTGTCGATAAACAGTAATTCTTTTTG 1172 27 100.0 33 ........................... GAAAGGTTCTATTGTTGCAGTTGATACCAACGG 1232 27 92.6 0 ...................T..A.... | ========== ====== ====== ====== =========================== ================================== ================== 4 27 98.2 34 TGTGCCGTGATGTACGCGGCTTGATAG # Left flank : ACTTACACTGATGCGTCATGGAAAATACCTCGTGACTCCTTGCTTCGTGATACCATTTTATTGGATAAATATGATCTTATTGAAAATTCAAAGGGCGAGATGGAACTTTGGATTGATGACCCCCATTGGCGAAATGGCTTAACTGATGATCGCCGATCTGTTAAATCAGTTGAGTCACTTTGTCTTCCTCATACAGTAGAGCGTTTTCCGTCGAAGAAATTTGATTTACAGAAGAATATGCTTAGCATTATAGATAATGTTCTTTCCGATGAATTTCAACCTGAGAATGTCATTGTAGCATTGGAGGCTGTTCGGTCCTTGGCACTCATGACTGGATTAATTTGTATTGATGAATGAGATTGAATTTATACCCTTATTTTTTAGCATTTGTAACCCCTTGATTTATTGAAGATAAAAAGCAAAGGTTTTAAAAAGGGGTAAAGTTGATATTTTCAGGTAACATATTGAAAAAATGAAGAATATTAGAAGAAACCTTCAGG # Right flank : GTTTAAATCTGAATATCGCGGGTAAGGGGAAACGACTACCTTCGTGAATTAAATGCGTCGACAGTAATAAACAATAAAAAAGCTAACATCTGCTGTTAGCTTTTTAAATTCATCTCATTCAAAGTCTACTTAAAAATCGGCATCAACCTCAAACACCATAGGTTCGCCAGTGACAGGGTGGTTTAGGCCAAGGTATTGTGCATGTAGATGTAAGCGGTTTGCTTTTTGACCGTATAAGTCATCACCGACAATCGGCATATTCATACCGTTTTGGTGGGCTGAGTGAATACGTAGTTGGTGAGTTCGGCCAGTTTTCGGGTAATAATAAACCTTGGTTTTACCATTCTTACGTTCGAGAACCTGCCATTTTGTAAGTGCAGGTTTGCCGTATTCGTAACAGACTAACTGGCGTGGGCGATCGTCTAAATCAACCCGCATCGGTAAGTTAATCTCACCGTGATCCTGCTCTGCAATACCATCTAGTAATGCCACATAACGCT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGCCGTGATGTACGCGGCTTGATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //