Array 1 524476-523450 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL573157.1 Ligilactobacillus animalis KCTC 3501 = DSM 20602 strain KCTC 3501 scaffold00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 524475 36 100.0 30 .................................... TGTGATCTTTGTGCCCGCGTCTCGTAAACG 524409 36 100.0 30 .................................... GGCAGAACAGGAGGCTGCTACAATGAATGA 524343 36 100.0 30 .................................... ATGTTCCCGTATCATATTCATCTCGCATAT 524277 36 100.0 30 .................................... CACTAGCACGTACATTGCTGGTGGGCTTGA 524211 36 100.0 30 .................................... AAACATCATCGAACCGTTTCTTTAAGCGAT 524145 36 100.0 30 .................................... AATTTTTTACTCAATCATGTTGACCTAGCA 524079 36 100.0 30 .................................... AATTTTTTACTCAATCATGTTGACCTAGCA 524013 36 100.0 30 .................................... ACTGTCTTTTTGTTATCGACTGTTAATTGT 523947 36 100.0 30 .................................... ATGGCAAAGTATCGTTTGACTGGACAGAAG 523881 36 100.0 30 .................................... TAAATGCTTAAATGATACAGCTTCGTGCTA 523815 36 100.0 30 .................................... ACGTTTCGATTTTCTTCATCTGGTCGGTGT 523749 36 100.0 30 .................................... ACCCAGAAGATACGGAAACGAGGATCGCAT 523683 36 100.0 30 .................................... CTATAACTATTTCCCAAGCTTTGACAATAT 523617 36 100.0 30 .................................... ATCTGAATGTGGACAAGGACGACGGTACAT 523551 36 100.0 30 .................................... CAAAGGTATCAACGGTGTTGTCCATTTCTT 523485 36 80.6 0 ........................AA...TT.GT.T | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.8 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : TGCGGATCTGGAAAGACAATTTGGTGAAAAAGAGGAAGTTAAAGACAGACTTGAGTCATTAGCAGTGGAGATAGCAAATATTATTTCGAGTGAATGTTTAGAAAATGAGTTAGATCTTGAGTATGATGAGATCACACTGCTAGAATTGATAAAGGCGATGGGTGTAAAAATCGAAACGACGATGTCATCGGTTTACGAAAAATGTTATGAGATAGTGCAAATTTTCAAATACTTAAGTAAGAAAAAATTATTAGTTTTCTTAAATGTTGGTGCTTATTTGACAGAAAAACAAATAAGAAGCTTACTTGAGTACATTGGACTGTGCAATTTGAATGTCATATTCCTTGAGCCAAGTAAGTTGTATGACTTACCGCAGTATATTTTAGATAGTGATTATTATTTAGAGTATTTGAATAGCTCTTCGGAGTCATAGAAAGCGAAAATTTTGCTAGAATTAGTAGCGCAATCACGAAACCACTGTGCCATTTTTTGCATTTGAG # Right flank : TTTCCGGTTGAGAATATGTGCAATTGAAAAATATTTTTACAGTATTTCTATTGACGGCAACTTTATAATTTGATATTATATTAGCGTTGTATTTGTGCATGCCACAACTGCAACCGCACGTTTTAAGTTCAAGTGCTCTCTGAGCCACTACATTACGGCGAGTCTAAGTAAAATACAAGGAGGTGCACATTAATGTACGCAATTATTGAAACAGGTGGTAAGCAACTTAAAGTAGAAGCTGGTCAAGCTATCTACGTTGAAAAGTTGGCTGCTGAAGCTGGTGAAAAAGTAACTTTTGATAAAGTTGTTTTAGTAGGCGGCGAAAACACAGTGATCGGTACACCTTTTGTTGAAGGTGCTACTGTTGAAGGTACTGTTGAAAAGCAAGGTCGTGCTAAGAAAGTTGTTACTTTCAAGTACAAGCCTAAGAAGCATCAACACACAAAGCAAGGTCATCGTCAACCATACACAAAGGTTGTTATCGACGCAATCAACGCATA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 533925-535942 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL573157.1 Ligilactobacillus animalis KCTC 3501 = DSM 20602 strain KCTC 3501 scaffold00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 533925 36 100.0 30 .................................... CGTAAGTTGGGAAACAGAATTAAAGAACTG 533991 36 100.0 31 .................................... CTACTTTTTTGACAAAAAATTAATTACTTTC 534058 36 100.0 30 .................................... GTATGTTTATGAGAGTTATTTTGAAGGATA 534124 36 100.0 30 .................................... TGGTTACACTTCACTATCTCAAATGATCTC 534190 36 100.0 30 .................................... TCTTGATAATGTCTGCAATCACATCTAATG 534256 36 100.0 31 .................................... TGAGCGATCGCATATTGTACCTGCGTTGGAT 534323 36 100.0 29 .................................... ACATAGCTATAAATAATTTATCAATGAAT 534388 36 100.0 30 .................................... AAGCAAGATGTAAAAGATTTTGTCACAGTA 534454 36 100.0 30 .................................... TATTTGTGTGGGGGGGTAAAGCGAAATTCA 534520 36 100.0 30 .................................... ACAACGATCGGTAATCGCTTTGCTAATTTC 534586 36 100.0 30 .................................... AGCATCTGATTGTGATGTTTCGTTGGCGCT 534652 36 100.0 31 .................................... GATCAGCAGGGTTGATCGTTACAGTAGCTTT 534719 36 100.0 30 .................................... AAAAGCATTAATACTAAAGCCGTGTTTATA 534785 36 100.0 30 .................................... AATGGCATTAAAAATCTGTTTAGCGATGTT 534851 36 100.0 30 .................................... GAACGGCATGTCACTATCTTGAATATCGAT 534917 36 100.0 31 .................................... TATACTAAAACGTATTAATGTATACTTGTAA 534984 36 100.0 30 .................................... GCTGCGCATATATGCAAGGAAGATTGGCCA 535050 36 100.0 30 .................................... AACAATTGACTCAAACAGCTTTGAAGAATA 535116 36 100.0 30 .................................... ATTGGCGTGTTTATTGGATGGGCGGTGAAT 535182 36 100.0 30 .................................... GATGTTATTAGCTGTTTTGAATGGTGTCAT 535248 36 100.0 30 .................................... GTAATTTTGGCCAAAATGCTGATGGAGGTT 535314 36 100.0 30 .................................... TGAGGTAGGCTTGTTCGGAGGTGCTGATGA 535380 36 100.0 30 .................................... GTATCGGCGGATCAGATAAAAATTAGTAAG 535446 36 100.0 29 .................................... AGTTTTAAAGAGAGTTTTCACTGTAAATA 535511 36 100.0 30 .................................... GAGCCAGAGTCTCTTAAATCTGAAAGCATT 535577 36 100.0 30 .................................... TTCAATCTTTAACACCTCTTCTTTCATTTC 535643 36 100.0 30 .................................... GTCGCTATTGTCCACTAATTACTCAAAAAA 535709 36 100.0 30 .................................... AAAACAAAGTGCTTTTTGAAGGCCGTGTTT 535775 36 100.0 30 .................................... TATTCAGCAACAAGTTCGGTGACTACCTGG 535841 36 100.0 30 .................................... AAGGCCAAGTTAGGAAAGGGGGCTAGTATA 535907 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : TATTCGTCTAATTCCATTGTTTTGATCCGGTCAAGTGGCCATTCTTTCAAAAATTCTTTTGCCAACTGTATATTTTGTTTCTTCCACGCCTCTGCTCGTTTTAACAGTGCTGATTTATTTTCAAAATACCAATCCGAAAAGTGTTTTATATTGATTTTTACCATCCTGTCACCCCATCGTTTTTATATAGCATACAATAAGCTTAGTAGCCGATGCACCTAAAACGCATATAAATTTAGACAAAAAAGTTCCATTAGAAATTTTTTCTAATTTCTTAAAAAGCATCTCAATAGTTAGGTAGTGACTCTAACAATTGAGATGCTTCATATTAATCTAGTACTGAAAATTTTAGACAGTTATATTTTTGCTTAACGTAGTGTATAATTATAATTGAATTGTGTATTACGTTAATGAAAAAACATGGAATCATACAAAACTGAAATCTTGCTAGGATAAGTAGCGCGATTACGAAACCAAAACGACATTTTTTTGCATTTGAG # Right flank : CTATTCAGCAACAAGTTCGGTGACTACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //