Array 1 107900-106236 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSA01000001.1 Salmonella enterica strain BCW_4384 NODE_1_length_557239_cov_4.11483, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107899 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107838 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107777 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107716 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107649 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107588 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107527 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107466 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107405 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107344 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107283 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107222 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107161 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107100 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107039 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 106978 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106917 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106856 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106795 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106692 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106631 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106570 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106509 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106448 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106387 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106326 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106265 29 96.6 0 A............................ | A [106238] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125283-124157 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSA01000001.1 Salmonella enterica strain BCW_4384 NODE_1_length_557239_cov_4.11483, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125282 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125221 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125160 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125099 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125038 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124977 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124916 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124855 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124794 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124733 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124672 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124611 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124550 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124489 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124428 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124367 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124306 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124245 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124184 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //