Array 1 39577-38819 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKJI01000055.1 Acetobacter tropicalis strain CS_006_W138 NODE_55_length_82409_cov_15.824376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 39576 32 100.0 35 ................................ TTATGAAGGAACAGCAGACAGCGGAAGGCATAATG 39509 32 100.0 34 ................................ GTGCTATCAATAACGATACTGGCGAAACAACATA 39443 32 100.0 34 ................................ TTTAGTTTTTGGGTTTATAATTTCGCTTTCTTTA 39377 32 100.0 33 ................................ TCTAGCCTCTGATGGTAAAGCCATTATTGAAAG 39312 32 100.0 34 ................................ GGGCATTTCTTTGGTTGCCGGAACAAAAAATGCC 39246 32 100.0 34 ................................ AGCATTGCGTCAGTAGAAGGGAGATTCCCAGTGA 39180 32 100.0 33 ................................ GCTTTCTACGGCCCACAAAATCGGCAGGATTTG 39115 32 100.0 34 ................................ CCCAGAAAAAGGTCTATGCTGGCTATGGAAGGGT 39049 32 100.0 35 ................................ TCCGCGTGCCTTGGTGAGTACTGCGCGAGCTTCTG 38982 32 100.0 36 ................................ TGGAGTTGCAATGGGACCAGGTTGATTTTGAACGTA 38914 32 100.0 33 ................................ GTTGTCGATGCATCCGAGTGCGATATTAACTGC 38849 31 81.2 0 ......T...A......C-.....G......T | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 98.4 34 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : GCCAGATTCTGGTGGCCACCCGTGGGCGCGAACAGACACGCCAAAGCCTGCGCGTGGCGGCGGATGTCTGGTGGGTGGAAAGCCACTGGGTTATTCTGGAAATGGTAAAACACAATATAGGCTGGGCATTTGTCTCAGACCATGTGCTGGCGGCCTCTCCCACAGCGCCGGATATTGTGGCCCCCAACCTCCAGTTCGATGCCGGAGAACGCCTGACCCCTCTTGTCACCGTGTGGCACAAGAAGCATCCTCATGGTCCTGCCGCCCAATGGCTCCGCAACCGCCTGCGCCAAGGCGGTATTCCCGGTGTTACGCATCCGTCGCGCGAACCCTGATCACCCATCAAAATCCCGGCAGGGTCGCGCACGCGTCAACTCATTATAAAATAAGAATTTTTTCAAACACGCTGATCCCAAAGCGTTCAGCAGCAGCACTCGTAACCGCCAGTTCGCGCAAAAAGCGCATTCCGCCCAGCCCCAGACAGGTGCTAAACTTACAGC # Right flank : ATGGGGGGAGAGCACGAATTGGTCATGTTCTCTGGCGGGCCACATGCAGGCGCGTTGGCGTAAGCCGGGAGGAGAGAACTAAAGCTCTTACGGGCTTCAGGGCATCTATGCGCAAATTGGAGGTAAGGATTGCTTAATAAGCAATGGTGACAGGTCATTCTGAATGATTACATTTTATTAAGAATAAGTGATACCTGAGGGGAAGGGAGGTCAGTGGTTCTTTACGCGCACTCTCTCCCTGCCCCTGCAGACAAGGCGCGATGGGAACCTTTGCGAGAGCATCTTGAGTGTGTCGCGCAAAGAGGGGCGCTTTTTGCACAGCCATTCGGACTGGCCATGCTCGCGCGGGCTGCGGGGCTTTTGCATGATATTGGTAAAGCATCTGCGGCGTATCAGGCTTATATCAGTTCAGAAGTCAGCCAGAAGGGACCAGATCACAGCACGGCGGGGGCACGTGAGGCTGTAACGTTATATGGCCAGCAACTGGGGCGTTTACTCGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10807-12173 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKJI01000052.1 Acetobacter tropicalis strain CS_006_W138 NODE_52_length_32637_cov_16.373165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 10807 32 100.0 34 ................................ TAACATTACTCAACATTTGCAAAATGGTTAAACG 10873 32 100.0 35 ................................ CATTGCAATGCGGCGTGCATCAAATTCCTCATAGG 10940 32 100.0 35 ................................ GCTCATTGCCGAGGCAAATAGCCTCATGCCGCGTG 11007 32 100.0 35 ................................ CCTGCCACAATCAGACTGAGGTGCCTGAGTATGCG 11074 32 100.0 34 ................................ ACTTGTGTTCGGATACACAATTGATAGGGCCAAG 11140 32 100.0 36 ................................ ATCTGTTTACTTGCCCACAGAGTTGAGGTCTGCACG 11208 32 100.0 35 ................................ TTGAAAACGTGCCGACATATGCTGAAAGATCACCA 11275 32 100.0 34 ................................ ATTGCCCTAGATATTTCATCTGTCAAAGTATAAG 11341 32 100.0 35 ................................ TGCAAAAGAGTTTGGAAAAGAAGTGCGTTGGTGAG 11408 32 100.0 34 ................................ GGCGGCGGCTATTTGTGGCGTGGATAGTAACGGG 11474 32 100.0 34 ................................ TGCCAAAGTCTATCGTGATTTAGAATTTGGCGAG 11540 32 100.0 38 ................................ GAGGTTGTTACTGGCAGACGTGCAGACATTCGTGAGTG 11610 32 100.0 34 ................................ GAGCGCCATTATAATTATACCCGAAAATATTGAG 11676 32 100.0 35 ................................ GATTGATTACGTCAAAGAAAGCGGTTTTACGAATG 11743 32 100.0 35 ................................ TTGCCGAAGATATTAGCTGAAAGACCAGTATCTTG 11810 32 100.0 34 ................................ AGCACCTCACGTTGGGCGAGCTGTGCGGGCTAAG 11876 32 100.0 34 ................................ ATTTGTCAGATCACCAATGATGAGCTTGCCTCGT 11942 32 96.9 35 .............T.................. ACCGCCCTGCCTGGTTGGTTCCTAGTGGGTGCCGA 12009 32 100.0 34 ................................ CCGCTGCGCTGGCGTCTGCTGCACTGGCGGGACG 12075 32 100.0 35 ................................ GCGTCCTGACCCATGATGGTGAACCATGGTTTGTG 12142 32 93.8 0 ........T..........T............ | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 99.6 35 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : CAGCCTGTGGCAGGTTGGCAGGGGGCACAAGGTGCAGAGTATTGCCACCCGCGCCGAGCACCAGCAGGACCGCATAACACAGCAGGCAGATACGCCAGTTGACGAGAGGCTCCCGCATAATGTCAGTTGATGGCGGAAAGGATGAGGCGGATGCAGTATATAATCCGGGTGGTGTCGTCATTATAGTATGCTACCACCATGAAATCATGCTGTGTGCGACAAAATAGTGTGGCCCAGGTAGGAACGACCATGGCCACCTTATAGCTGACCGCTCCCTATTCCCTGCACGTAGCTATACTGCCCACCTATTTGCGGCAGACCAGCGCGAACCCCAATCACCCCTTAAAACCCCGCCAGATTCGCGCAAGATATAACCCTTTCAAACCAAAAGATTTTCTTCCAAACCGCCAGATGGAAGCGTAACAATTCCCCGCTTTCCACACAGGTTCGCGCACACCCGCACATTCCCCCAGTCCTTTTCTGCTGCTATGCTCCCACAG # Right flank : CTGCCTGTTCATAAGCTGTTTCGCTCCGCGTTGTGCGGATCGGTAGCCGGGGGAGGGCGAGTCTTATAGTCCCGTTGTGGTGGCGGGTGCTTTCTCTCCCCTGTGGCCGTCTTCTGTATTCAGGAAAACACGATTGTGCGGCGGCCGTTTAGCATAACACGTTGTTCCACATGCAGTTTTACCGCGCGGGCCAGAACTTGCGATTCAACGCCCCGGCCTGTGGCAATGTAGTCCTCGGGGGAGAGGTTGTGGGTGACGCGGGCGGTTTCCTGCTCAATGATAGGCCCTTCATCCAGATCAGCCGTTACGTAATGGGCCGTGGCGCCAATCAGCTTTACCCCGCGCGCGTAAGCCTGATGGTAAGGGCGTGCGCCCTTGAAGGAAGGCAGGAAGGAGTGGTGGATGTTGATGATCTGTCCGCTCAATTCAGCGGAAAGCCGGTCAGAGAGCACCTGCATGTATCGGGCCAGAACAATCAGGGAGGCCCCTGTTTCCTTCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //