Array 1 8775-8027 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKG01000001.1 Azomonas agilis strain DSM 375 LX59DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8774 28 100.0 32 ............................ AATAGGCGGGCGATGGCCTCGACGAATTCCTC 8714 28 100.0 32 ............................ TAGAAAACCTGCTCTTGGATAATCCGCACGGC 8654 28 100.0 32 ............................ AATAGGCAACTACCAAGAGCGCCAGTGTCATC 8594 28 100.0 32 ............................ GCTTCCGTGACGGGCGCACCCCATAACGACAC 8534 28 96.4 32 ......C..................... ATGATGTTGCTCCAGTGTTGAGTCAGGGTTCG 8474 28 100.0 32 ............................ ATGACGTATTTCACCATGCCTAAGTGAATACA 8414 28 100.0 32 ............................ AGTCGCGCGCTGAAATAGTTTTTCCGCAACTT 8354 28 100.0 32 ............................ TGTCGGTGTAGGTTGGCGTAAGTTCTTCGCCG 8294 28 100.0 32 ............................ TTAACCGCTGGGATGAGGCCACCGAACATATC 8234 28 100.0 32 ............................ GCCAACTTTTGCGTCTGAATCAGATGAGATTC 8174 28 100.0 32 ............................ AGCTTGGCTTTCATTCATTCGACGGGGGAAAT 8114 28 100.0 32 ............................ ATTAGCGCAGGAGTATCTAGCCCGGATGCCCA 8054 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GGAAATCTTGTCGGTATAAATCAGGATCAACCCCGTTTGGCGGCTGAATTCATTGAGGCGCTGAGGCAATGGGCCTGCCGCTAGGTTGAATGGGTAGGTTTGTTCCAGTTGAGTCGTGGCCTGTGCCGCCCAAGTGGTGTGAGGTAAGCCGCCCCCTGCTATCCCTGTGGTGACGAGTGCCAGTAATAAAGAAATGCGACCTACATCGCAGGAAAAGCGTGGCATGGAAAGGAGCACTCCTAGGTTAAAGCCATAGGCATAAATGCGAATAATTGCGTTCTGCCTAATGACACGAAGGAGCAGGGGGTTGTCCTCATCTATTTATGAAAATATTTTTACATTTGAAGGCGAGGTGCTGTGAACGCTTCAAACCCTTTTTTTAATCTTGATGCAGAGCCCGCATTATTCGGGGTTTGTGGCGTAGGGTAAAAATTTGGGTTAAACGATAGAAAAAGCTGTTTTTGCCTTTTGCCATAATAAGTTGGATGATTTAAGCTCTT # Right flank : TGCAACTATGAGAAACCTATGCCAACCCTGACTTTTCTATTGGAGCGCGTGGCAACGCCGCTAGGCCAGATGCTGTTGGTTACTGATGAGCAAGGGCATCTGCGGGCCATAGACTGGCAGGAGTACGAAGACCGTATGCACCTGCTGATGCGTCGGCAATACCCCAAAATCTCCATAAACATGCAGGAGAACCCGCAAAAGTCACCGGCTACTCAAGCTTTGCTAGCGTACTTTGAGGGGGACATTGCGATGATTGAACCGCTCCAGATTCAGGTGGTCACCGGCGGAACGGATTTCCAGCGTGAAGTATGGAAGGCACTGTGCAGCATTCCCCAAGGGCAGACCATCAGCTATGGCGAGCTGGCCCGGCGTATTAACCGCCCTAAAGCAGTGCGAGCGGTTGGTTTGGCTAATGGGGCTAATCCCATTGGAATCGTAATCCCCTGCCATCGTGTCATTGGTAGCAACGCCTCCTTAACGGGCTATGGCGGTGGTTTGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 220940-220671 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKG01000001.1 Azomonas agilis strain DSM 375 LX59DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 220939 28 100.0 32 ............................ TCTTGCTGTAACTTCAGCAGCTCAAGCTGGGC 220879 28 100.0 32 ............................ ACCCGGTTAGCCATCCAGCCGAATAAGAACAC 220819 28 100.0 33 ............................ AGGATCGTCGGAGTAAGCCGGTGGCATTCATCA 220758 28 100.0 32 ............................ GTACAGCCCTCTTTGCTGCGTGTTGTGCCGAT 220698 28 89.3 0 ......................C..GG. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.9 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : TTAAACCAACTCATGGCCTTGGATTGGTTAAAAGGCATGCGTGACCACAGTGATGTGGAGCCTGTGCGCTCAGTGCCAGAGGCCGTGCAGTATCGGGTGGTGCGCCGTGTGCAAAGTGATAGCAGCCCAGAGCGTCTGCGCAATCGTCTTACCCGGCGCAAGGGGCTGACAGAGGCTCAAGCATTGGAGCAGATTCCGGCGCACACGCCTGAAAAGCTACTCAGCTTGCCCTTTGTCAGCCTGCGCAGCCAAAGTACGGGGCAGAGTTTTAAGCTGTTTATTGAGCATGGTGCGCTGATTGCTCAGCCGCAACCGGGAGACTTTTCGGCGTATGGTTTAAGCGCACAGGCAACCATTCCTTGGTTCTGAACCCTTTTTTCAGAGGGTGTTCTCAGGCTCTTTAAAAACAAGGAGTTAGCGATTTACTCAAAAAAAGGGGTAAATCGCTGGGTTGAGCCTTTTTTCCTTTTGCTTTATCGCATTAGGGAAATTAAGCTCTT # Right flank : GTTAAGACGAAGCAATATAACGATCCCGCCGGTGGTTGAGGCTAATAGCTAAGTTAAACACCAGTGCCCCCAGAAGCGACAACAGCACAGCTTGAGTCGGTAGCAGCGTAAACGCCACACTAAACAGCACCAGGTCAAAAATGAGCTGCACCCAGCCAGCCCGAAAGCCAGTACGCTCCTGAATATACAGAGCGACAACCCCAACACCGCCACAGCTACAACCGTGGCGAAACAGCATCAACAAGCCAATCCCTGTACACAAACCTCCTAGGACAGCGGCAACCCAACCGTTTAAATACTGGTATTGAATAAACTGAGGCATAAGGTCGGTTAACAGAGAAATACTGCTGATTGCGATCAGGGATTTAAGAGTAAAGCGCCCCCCCATGCGTATAAAAGCGAAGATAAAAAAGGGGACATTAATCAGAAAAAAAACGCTGCCAAAACTAAAGCCTGTGGCTAAAGCAATTAATAAAGCTAAGCCCGCAAATTGTCCGGTA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 107283-108043 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKG01000009.1 Azomonas agilis strain DSM 375 LX59DRAFT_scaffold00009.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107283 29 96.6 32 .T........................... AATGGCGCGGCATCCACAAACACACCGGCCTT 107344 29 100.0 32 ............................. GTGGAGCGCTGTGGGAATTTACCTTGCCAGCA 107405 29 100.0 32 ............................. CGCTGGAGCGACTGTCCAGCTTTGCACGAACC 107466 29 100.0 32 ............................. TGATTCGATAATCATCGCCAGCTTTGATAACT 107527 29 100.0 32 ............................. CGCTGGAGCGACTGTCCAGCTTTGCACGAACC 107588 29 100.0 32 ............................. TGATTCGATAATCATCGCCAGCTTTGATAACT 107649 29 100.0 32 ............................. CGCCACATACACATCGGCACCAAGCCTATGCG 107710 29 100.0 32 ............................. TCAATCACCCGCTGAACGCATGCGGGAATGGG 107771 29 100.0 32 ............................. CAGGTGAGGGTATCGCCATCGGATACACCGAC 107832 29 100.0 32 ............................. TTTATAAGTATGCTTCAAAAACATTAAACCCT 107893 29 96.6 32 ............................T ACCAGAACCACGAGATACGTCAACAACTATGA 107954 29 100.0 32 ............................. GCTCGAATTTGAGCCTTGGTTATATTTCTCTA 108015 29 93.1 0 ............C.T.............. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.9 32 GCGTTCCCCGCAGCCGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCA # Right flank : GAAGCTCCCGCCCCGCCCCGTTGCCTCTTTCAGCGCTCCAAATACTCCCAATCTCTAAGTGCCCCGACTTTCCGGGCCATATCCTCAATATCTACATGAGCCGTTAATACTTCTCCCGTAGGCGTAGCGATATGGTAGAAACGGCCTAGTTGAGGGTAGCGGGAACTGTCCTCTGGGCAGCGCTTAATCTGCATATCGCGTGGGGTTAGCTTACGATTAAGCCGAGCCAATAGTGCCAACTCATTAATGTATGCAGGTTCCATATCTACTCCTTGGGTAACAACCGGCTACGGATATATGCAATGAATGTAGAATCCGGTAAACCGATGTTCATCCCATTGCATTGGGATAGAGGCAGAGCGCTGTATGAGTCAGCGCTCTGCTTCTGATACGGGTTGTTACATCAAGATGTATGCCACGGGGGGGTTAAGCCAAACCCAGAGCTTTAGCCACTCCAGCACCGTAGGCAGGATCTGCTTGGGTGCAGTGCTCAATATGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //