Array 1 94045-92857 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRVU01000107.1 Escherichia coli strain A158 NODE_11_length_98515_cov_92.1104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94044 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 93983 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 93922 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 93861 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 93800 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 93739 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 93678 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 93617 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 93556 29 96.6 32 ................T............ TACAGTTTCCATAAATTCACCTCGTTTATATA 93495 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 93434 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 93373 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 93312 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 93251 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 93190 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 93129 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 93068 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 93007 29 96.6 32 ...........................T. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 92946 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 92885 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTAGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAATCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21264-19587 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRVU01000096.1 Escherichia coli strain A158 NODE_8_length_110007_cov_84.0053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21263 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 21202 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 21141 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 21080 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 21019 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 20958 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 20897 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 20836 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 20775 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 20714 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 20653 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 20592 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 20531 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 20470 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 20409 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 20348 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 20287 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 20226 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 20164 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 20103 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 20042 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 19981 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 19920 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 19859 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 19798 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 19737 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 19676 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 19615 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //