Array 1 513745-513256 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOYX01000001.1 Escherichia coli strain 5.1-R1 NODE_1_length_668802_cov_24.7976, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 513744 28 100.0 32 ............................ GCCAATAGCAATAGCGCGATATGCTTCCCGCC 513684 28 100.0 33 ............................ TCTAATCACACATTGCCGCCTGGACTGGTTTAG 513623 28 100.0 32 ............................ AAACCCAGGAACGCCGCTCCCGCCGCCACTAT 513563 28 100.0 32 ............................ CTAGAGGGTAACCTTGTTGATGAGCGGGTAAT 513503 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 513443 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 513383 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 513284 28 82.1 0 ...G...A...............CA..C | T [513264] ========== ====== ====== ====== ============================ ======================================================================= ================== 8 28 97.8 38 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : TCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 525475-522803 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOYX01000001.1 Escherichia coli strain 5.1-R1 NODE_1_length_668802_cov_24.7976, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 525474 28 100.0 32 ............................ GTATGCGACGTGACTGGATGGTTCAGTCATTT 525414 28 100.0 32 ............................ CGTGGATATTTCTGGTGTTAACGTTTTAATCG 525354 28 100.0 32 ............................ AATGATCTGAATCCAACGAATCTCACTTTTTG 525294 28 100.0 32 ............................ GCCTGCACGAAGGCAATCTTACTCTCTGGTAT 525234 28 100.0 32 ............................ CAGTTCAATAACAATATCTGAGGCATGTACTG 525174 28 100.0 33 ............................ CTGCCAGATAAACCGTGTGTGTTTTCCATCATT 525113 28 100.0 32 ............................ TGCCCCGGAATCAAGGAAGTCATCAGGCTGAT 525053 28 100.0 32 ............................ AGAGACGCATGAAGGCTATGCGCCGAAAATTG 524993 28 100.0 32 ............................ TGATGATGAATATTACAAAGCGGAATAGCTCT 524933 28 100.0 32 ............................ ATCAACAATCTGAAGGTCTGGTGTGCTGGTGG 524873 28 100.0 32 ............................ CTTAAAAGAAATCAGTAAATAAGACGCTAACG 524813 28 100.0 32 ............................ TGCACCCCGTAAATTTGAGTTGGTATCAACGG 524753 28 100.0 32 ............................ AAGCTCGCCCGCCGACATCACTTGTGCATCTA 524693 28 100.0 32 ............................ GCAGAACACCACGGTCAAACCAGCGGCGGGGC 524633 28 100.0 32 ............................ AGCCAGAATTCTGCGGCGATATCGAGCGCTTC 524573 28 100.0 32 ............................ GAACGCGGTCATGCGGTATGCGCCGACAATAC 524513 28 100.0 32 ............................ CTGGAGGTGCTCACACTCACGCGGAGTGAGAC 524453 28 100.0 32 ............................ ACAATCAGGCGATAAACCTCACCGTTAATACG 524393 28 100.0 32 ............................ AGACGTCAAGAACGGTAACCCGGTTGAAGTCT 524333 28 100.0 32 ............................ ACTGCCCCGACTGCGGGCCGGTGTGCGGCGAC 524273 28 100.0 32 ............................ GATACCGGATTACCCTGGTCAGCCAGGAATGT 524213 28 100.0 32 ............................ GATACCGGATTACCCTGGTCAGCCAGGAATGT 524153 28 100.0 32 ............................ GATACCGGATTACCCTGGTCAGCCAGGAATGT 524093 28 100.0 32 ............................ GATACCGGATTACCCTGGTCAGCCAGGAATGT 524033 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 523973 28 100.0 32 ............................ TTCCCTGCCGGTTCTCTGTATCCATGAATATC 523913 28 100.0 32 ............................ CAGATATCGTGCCGCACCGATCGTGACGAGCA 523853 28 100.0 32 ............................ ATACCGCCATCAAGTGTAATGCCCTGATCCAT 523793 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 523733 28 100.0 32 ............................ ATCAACATGACACCCGATTGTATTCAGGAATT 523673 28 100.0 32 ............................ GGTCGGTGAATCGCTGCATCGCGGTTCATATA 523613 28 100.0 33 ............................ CACTCCGAAAAATTGAGCGTCGAGCACTCGCCA 523552 28 100.0 32 ............................ TGAATTTCTCCGCGCTGCAGCGCGATGTCATC 523492 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 523432 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 523372 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 523312 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 523252 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 523192 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 523132 28 100.0 32 ............................ CAGTCCAGAACCTCGTCAGCGACGGTACTCGC 523072 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 523012 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 522952 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 522892 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 522832 28 85.7 0 ....................T...C.CT | C,A [522806,522809] ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //