Array 1 2910807-2908825 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLT01000007.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL02325 2014LSAL02325_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2910806 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 2910745 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 2910684 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 2910623 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 2910562 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 2910501 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 2910440 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 2910379 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 2910318 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 2910257 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 2910196 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 2910135 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 2910074 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 2910013 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 2909952 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 2909891 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 2909830 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 2909769 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 2909708 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 2909647 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 2909586 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 2909525 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 2909464 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 2909403 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 2909342 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 2909281 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 2909220 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 2909159 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 2909098 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 2909037 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 2908976 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 2908915 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2908854 29 96.6 0 A............................ | A [2908827] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2928743-2927065 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLT01000007.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL02325 2014LSAL02325_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2928742 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 2928681 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 2928620 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 2928559 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2928498 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 2928437 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 2928376 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 2928315 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 2928254 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 2928193 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 2928132 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 2928071 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 2928010 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 2927948 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 2927887 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 2927826 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 2927765 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 2927704 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 2927642 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 2927581 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 2927520 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 2927458 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 2927397 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 2927336 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 2927275 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 2927214 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 2927153 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2927092 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //