Array 1 193551-194676 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMH01000003.1 Salmonella enterica strain BCW_1733 NODE_3_length_320613_cov_0.474865, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193551 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 193612 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 193673 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 193734 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 193795 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 193856 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 193917 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 193978 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 194039 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 194100 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 194161 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 194222 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 194283 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 194344 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 194405 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 194466 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 194527 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 194588 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 194649 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 210847-212526 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMH01000003.1 Salmonella enterica strain BCW_1733 NODE_3_length_320613_cov_0.474865, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210847 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 210908 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 210969 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 211030 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 211091 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 211152 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 211213 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 211274 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 211335 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 211396 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 211457 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 211518 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 211580 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 211642 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 211703 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 211764 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 211825 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 211886 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 211947 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 212008 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 212069 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 212131 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 212192 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 212253 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 212314 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 212375 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 212436 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 212497 29 93.1 0 A..............A............. | A [212523] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //