Array 1 63188-63421 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073071.1 Clostridium perfringens strain 19TSBNCP plasmid unnamed1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 63188 36 80.6 30 T...A....T..C...A.........A......C.. GCTTATTAGGATGATTTAATAATTCGTCTT 63254 36 97.2 30 .........T.......................... AATTACATTTTTACAAAACATGAAAGTGAG 63320 36 100.0 30 .................................... GAGTGATTAATTCATCACCATTAGTTGAAC 63386 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.5 30 CTTTGAGAACCATGCTGTTTTATATGGTTCTAAATC # Left flank : TTCACCGTTTTGAATTTTTATTTTTTCTTCCTTAGTTGCTTCTCTTAGCGTTTTTTGTTCTCCATTTTCATCAATAAAAATTGTAACCGGAGCATGAGCATATACTCCTATACCTTTTTCCCCTTTCTGAACTTGAAAACCTAATTTTTTCCATCCTTCATAACTAGCGACTGCGATAGCTCCTTTAAATTGTTCATCAATTAAAGATAGGTTTAACGGACTATAGTTGTGTATCCTAGACATAAATTTAGCAAATTCAGCCATTTCTTTCGGATCAGCTTGATATTGTTCTATTTTCTTATTAGAAAGTGCTATTAAATCGTCCAATTCTTTCTGTTTTTCTTCTTTAGACTTAGCTTTCCAATTTCCTTTGCGATACGCCATTTGAAAATCTCCTCTCAATTTTTTTGACATAATACGTCACGTTTTTATTATATCAGATAGATAGAAACTATTCAAAATAAAAAAGAAGTCGTAAAAGACTTCTTTTCGGATTACTA # Right flank : CTCAAAACCAATTTTATTCACATGATCCTTCCGTCTGGTGACACAACTTGACGGAGTTAACCCTTTAGTGAGTGGCTGTACCCTCACCATTACGTTGCCAAATCAACGTTAAATACTAGTTAATCATTTATTGTAAGCTTAATAGAATTTCTCTCGCATTTTCTATTTAGTTGCTCAATAAACTGATAATATGCCCATTCTCCAAGATTTTCTTTATCAATAGAATTAACAACAATATTACCGCATTTATTATTGGTTGCAACTTTGACAATTCTACTAGTACATTGGTTATTGTATGTTTTTACAAAATTTCCTTCTCTTAATTTAATAGCTTCCCATCTATCATAATTGAGTTTACGTTTTCTTCCATGAGAACCTTTGGCTCTTTGTCAAATCGGACTGATGAGTCGGATATATAAGATGATAAACTTGAGATTACTCTCAGATTTATCATCTTTTTTAGTTATTTAATTTTAAT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAGAACCATGCTGTTTTATATGGTTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 1681923-1685513 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073070.1 Clostridium perfringens strain 19TSBNCP chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1681923 36 86.1 30 A...C.TA..A......................... ATGAAATTATATTTTGTCTATAACATATCA A,A [1681925,1681935] 1681991 36 100.0 30 .................................... ACTTGTAATGTAGATTCAGTTCTTAATGTT 1682057 36 100.0 30 .................................... ATTAAGAAATTAATGGTCTGCTGCACAATC 1682123 36 100.0 30 .................................... GAAAATAATCTTTTTAATGAATTCCCACTT 1682189 36 100.0 30 .................................... TTAAGAGGAAAACTATGGGAAAAGCGTATG 1682255 36 100.0 30 .................................... ATTCTAAAGTAACTACATTAACTTCTAATT 1682321 36 100.0 30 .................................... AAGCAAGAGTTAACAGTTGTTAATAACAAA 1682387 36 100.0 30 .................................... CCAGGGACTACAGAATATATGTTGAAAATA 1682453 36 100.0 29 .................................... TCTTTTTTATCTACATCCCATATTTCCAC 1682518 36 100.0 30 .................................... TGTTTAGCTTGCTTAACTGCTAAGCAAAAA 1682584 36 100.0 30 .................................... GGGGTAACACTAACATATAAAGAAAATGAA 1682650 36 100.0 30 .................................... CAAATTCTTATGAAAAGTTTGTTGAAAAAC 1682716 36 100.0 30 .................................... CATAAAATGACAAAGGAAATCAAAAATGAG 1682782 36 100.0 29 .................................... AAACTATGAGTGAAAATGCTAAAGGTTCT 1682847 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 1682913 36 100.0 30 .................................... CATAAAATGACAAAGGAAATCAAAAATGAG 1682979 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 1683045 36 100.0 30 .................................... TTATAAAATTTAGGAAGATTAGTTACAAGT 1683111 36 100.0 30 .................................... GCTGTAGAAATAGCCTCATCTCTTCTTTGT 1683177 36 100.0 29 .................................... AAACTATGAGTGAAAATGCTAAAGGTTCT 1683242 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 1683308 36 100.0 30 .................................... CATAAAATGACAAAGGAAATCAAAAATGAG 1683374 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 1683440 36 100.0 30 .................................... TTATAAAATTTAGGAAGATTAGTTACAAGT 1683506 36 100.0 30 .................................... GCTGTAGAAATAGCCTCATCTCTTCTTTGT 1683572 36 100.0 29 .................................... ACATAGAGTTTACGTATGTAGTAGATTCT 1683637 36 100.0 30 .................................... AGGATTTTGATAAGAACATAAGAGAAGGCA 1683703 36 100.0 29 .................................... CCAAAGCCTTAAACTCATCTATAAAAAAG 1683768 36 100.0 30 .................................... TATTTTTTGTAACATAATACACCCCCAAAT 1683834 36 100.0 30 .................................... GATGAAGATTCTATTGATGAAATCTTGCAA 1683900 36 100.0 30 .................................... CTATTATGAAAAGACTAGTATTAGAAGTAA 1683966 36 100.0 30 .................................... AGGATTTTGATAAGAACATAAGAGAAGGCA 1684032 36 100.0 29 .................................... CCAAAGCCTTAAACTCATCTATAAAAAAG 1684097 36 100.0 30 .................................... TATTTTTTGTAACATAATACACCCCCAAAT 1684163 36 100.0 30 .................................... AGCTGAAATGCTTAAACCTATTACAGACGC 1684229 36 100.0 29 .................................... TATAAAACTCTTGAATAACACTACCATTA 1684294 36 100.0 30 .................................... GTTTCTTTAGTCATATACTTTGTTATATAA 1684360 36 100.0 30 .................................... TCTCATTATCGAGAATTATGCCACCTTCTA 1684426 36 100.0 30 .................................... TTTGAGTTATTAATGTTTGATGAAGATATT 1684492 36 100.0 30 .................................... GAACTTATAGGAGCAGTATTAACAACAGAA 1684558 36 100.0 28 .................................... GCATGAATTAATAATGGCTCAATTTGAA 1684622 36 100.0 30 .................................... GATGAAATAAACCAAGCTAAATTGAAGTTA 1684688 36 100.0 29 .................................... TTAAATCGTTGTTTAAGTATCTCATAGCC 1684753 36 100.0 30 .................................... AACTCTTTCTTTAGCTCTAATCCTATAGGT 1684819 36 100.0 30 .................................... GATGTTGAGGGAGATGATGTTATTTTAAGA 1684885 36 100.0 30 .................................... ACTGATAATATGGGAGTTAAACATAAATTG 1684951 36 100.0 30 .................................... TTAAGAAAATTATACCACTTTTGAATAAAG 1685017 36 100.0 29 .................................... ACATAGGAGAGGAAATTGAGAGATTACCC 1685082 36 100.0 30 .................................... TACTTATAATTATTTAAATAGTGCTAGAGT 1685148 36 100.0 30 .................................... GAGAATGATGTTGCTAATAATGAAAAAATA 1685214 36 100.0 30 .................................... TTAAAAGGTGCATTAACTCCAATGCTCTTG 1685280 36 100.0 30 .................................... GTAAGAATGGGATTTGTCTTGGCTCCTCAT 1685346 36 100.0 30 .................................... TTATATTAGTTACTCAAAATGATAGGCTTA 1685412 36 100.0 30 .................................... AAGAGTTAGTACGGAGGAGCAGAACGAAAG 1685478 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 55 36 99.7 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //