Array 1 199211-197290 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKI01000001.1 Salmonella sp. S109-25604 NODE_1_length_519394_cov_115.86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 199210 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 199149 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 199088 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 199027 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 198966 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 198905 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 198844 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 198783 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 198722 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 198661 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 198600 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 198539 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 198478 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 198417 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 198356 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 198295 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 198234 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 198173 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 198112 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 198051 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 197990 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 197929 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 197868 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 197807 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 197746 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 197685 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 197624 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 197563 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 197502 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 197441 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 197380 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 197319 29 93.1 0 A...........T................ | A [197292] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 217253-215822 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKI01000001.1 Salmonella sp. S109-25604 NODE_1_length_519394_cov_115.86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217252 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 217191 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 217130 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 217069 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 217008 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 216947 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 216886 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 216825 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 216764 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 216703 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 216642 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 216581 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 216520 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 216459 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 216398 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 216337 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 216276 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 216215 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 216154 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 216093 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 216032 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 215971 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 215910 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 215849 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //