Array 1 26278-24417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMZ01000014.1 Salmonella enterica subsp. enterica serovar Enteritidis str. SHSE004 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26277 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 26216 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 26154 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 26093 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 26032 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 25971 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 25910 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 25849 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 25788 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 25727 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 25666 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 25605 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 25544 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 25483 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 25422 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 25361 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 25300 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 25239 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 25178 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 25117 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 25056 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 24995 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 24934 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 24873 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 24812 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 24751 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 24690 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 24629 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 24568 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 24507 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 24446 29 93.1 0 A...........T................ | A [24419] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43739-42918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMZ01000014.1 Salmonella enterica subsp. enterica serovar Enteritidis str. SHSE004 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43738 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 43677 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 43616 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 43555 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 43494 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 43433 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 43372 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 43311 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 43250 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 43189 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 43128 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 43067 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 43006 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 42945 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //