Array 1 239717-239383 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCJ01000039.1 Streptomyces sp. ScaeMP-e83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 239716 29 100.0 32 ............................. ACATTCGCGCAGGAACGCGGGCTGAGGGTGAT 239655 29 100.0 32 ............................. CAGTTCGAGCAGATCGGCAACGCCGTCCCGCC 239594 29 100.0 32 ............................. GCCACCCGCCAGGACTTCCTGCCGCCTGATGC 239533 29 96.6 32 ...........................T. GTCTCCAGCACCGCGAGGGGTACGCGTGTCTG 239472 29 96.6 32 .................A........... TACGGTGCGGCGCGATGCGGCCGCGACGATGG 239411 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGGTCCCCGCGCAGGCGGGGGTGTTCCG # Left flank : CCGAACAAGGGCACCCCGATGACGGGCGTCCTGGTGGCGGGCGTGGACTCGGGGGGCGTGCCGTTCGTGGTGCGGCTGAACGCGGTGAGGGACGCGGTGGACGCGGAGGACCTTGATGCGTTCGTGGGGTCGATCACGGTGAAGTAGGGGGTGGGCGGGGGCCGTTCGGAAGGTTCAGGGGACTCGGGGGCGCTTGTACGCCACTGCCGCCCGCGACCTGTCCGCCGGGCCGCGCCCGGACGAACGGACGGTCACGACCGCCTGCACCTGCTTCGCACCCCACTCCACCCGTTCCATCCGCGTGGCCCACTGCACCTGCCCAGATATCGCCACGGCGTGCGGTGTTTCCCGGCGGCAGCAGGGAACACCGCACGGCCCGACCGAGACTTCCGAGCGCTTTGCCCATCGAGCATTCCTGCCCCTGCCACAATGGGAGGGTGGCGGGAGCGGCGAAAGGTCAAGGGCCGGCAAAGCCCTTCTAACGCCGCAGGTCAGGAAGA # Right flank : TCCGGGGCGCCGGTGGCGCTGCTGTGGCGGCGGGGCCGTTACGAGGCGGTCAGCCCGGCGACCGGCAGCCGGAACCGGGTCGACGAAGACAACGCGGCGGACTTCGCGGAACGGGCGGTGATGTTCTACCGGCCGCTGCCGGAGAAGCCGATGCGCACGGCCCGGCTGCTGCTGTTCGGTCTGCGGGGCGCCCGGGCCGACCTGCGCAACCTCCTCATCAGCGGTCTGGTGACGGTCGGGCTGGGTGCCCTGGTGCCGATCGCGACGGGGCAGATCCTCGGTACGTTCGTGCCCCGGGCGCAGACGGATCTGATCGCGCAGGTGTGCCTGGTCCTGATGATCACGAGCGTCGTCGGGGCGACGTTCATGCTGTTGCAGAGCCTGTCGCTGCTGCGGATGGAGGGCCGGATCGAGAGCACGCTGCAACCGGCCGTCCGGGACCGGCTGCTGCGGCTGCCGACGAGGTTCTTCACCGAGCGTTCCATGGGCGAACTGGCCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90335-90565 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCJ01000026.1 Streptomyces sp. ScaeMP-e83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 90335 30 100.0 39 .............................. AGCATTCCCGGTCACCGGCACCCGAAGGCCCACCGCCGC 90404 30 100.0 37 .............................. AGTACGAGGCGATCCTCATGCTGCGGGGCCTGGTCGC 90471 30 100.0 35 .............................. CGGACCGGCGGCACCCCGGGCGCCCGGGTCTGGGT 90536 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 100.0 37 GTTGCGACCCCTCCAGGGGTGATGACGACC # Left flank : GTGTGTCCTTTTCAGCACCTGCGGCGTCGCCCGCATGAACGAGAGGTCGGCAATGAAGGTAGCGATATTGTGCCTAATCATCGTGATGGCGCTCGTCCAGGTCGTGAAACCGCAGTTGCTCTGGAAGGTCAACCGTCCTCTGCAGAAGCCGTTCGTGAAAGACTACGACGCGACCGAACCCACGCACGCCGGATACATGATGAGCCGCGCCGTGGGGGCGGTGGTCCTCGTGGCTTCGGTGACCATGTTGATCAACACCCTCTGACTTCTAGGGCCTTTCCTGTGGATCAGCTTGCCGACCAGATGAAGACGGCGGCGATGCGGAGTCCCGCAAGGGAGATGGCGGCGGTCTTGTCGTAGCGGGAGGCGAGGCCGCGCCACTGCTTGAGCTTGTTGATGCACCACTCGACGGTGGTGCGCCGTTTGTAGGCGTTCACGGTCGAAGGCCGGTGGCCGTCTTCCTCGGCTTCCTCGGTGGCGACGCTGCACTTGCCGGACGT # Right flank : CCGAGGGTGAAGCCCCTGCTCACAGGCGCCGCGCCCCCGCCTCGCCGTGCTAATTCTGCAGCAACTCGGCGGTGGTGCATCAACCCTGCTCACGGCGTCGACGGAATGGCTCAGGCTGTGGGATGGAGGGCTGTGCGTCCGTCCAGCCTACGGCTGCCAGCGACCGAGGGGCAGAGGAGGCGCGTGAGAGTGGTGCTGCCCTATTGCGCGTTTTGCGGAATCTCACGTGTCATTGGTGGAGAGAAAACCTTGCTCCCTTGGTCCGCCATCTTTCTGTGCTGCCGCCGTCGATGACACGACGTGATGGCAAGAATACGTAGCGCTCTGGGGGTGTTGTGCGGGTCGGAGTGGACATTGACTCAGATGTGCCAAGCATGGGCTAGGAGCACGTACACGGGTCGGCGCGGGCGGTGATGCCGGAATCGCAGCCGCCGGTGCGGCCGGGTAGTTCGGGTACCCGGCCGAATCCGCTCCCATAGAAGAAGGAGCCGCAGGCCGCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACCCCTCCAGGGGTGATGACGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 99910-99020 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCJ01000026.1 Streptomyces sp. ScaeMP-e83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 99909 29 100.0 37 ............................. CGATGTCGCCTACCGGCAGCATGCCCACGGTGCCGCA 99843 29 100.0 36 ............................. CTGGTGTGGGCGACCCGGTACTTCCTCCAAGCCCTC 99778 29 100.0 35 ............................. GCAGCTTGTCGACGTGGTAGACGGTGTTGCCGGCC 99714 29 100.0 36 ............................. ATGAGGAGCTGTCGCAGCAGGAAGGCTCCTACCGCG 99649 29 100.0 37 ............................. AGGGACGACGCCGCACGGGGGCCGCGTCCCCTCCCCT 99583 29 100.0 37 ............................. CGCACGTGACGGCCGCCGTCTTCGAGCCGGTACGCCC 99517 29 100.0 36 ............................. CCGTACATGGCCCCGTTCTGCCACCCCCGTGTGCGC G [99499] 99451 29 100.0 37 ............................. ACGTGGCCGACGAGCCGCCACTCGCCGGCGCCGTCAC 99385 29 100.0 40 ............................. TTCATCCTCCAGGTCCCCGTCCAGTTCGTACGGCGTGAGG 99316 29 100.0 41 ............................. CGAGCAACTCGCTGACGGGGCCGCTGTACCAGCGGTGCGCG 99246 29 100.0 38 ............................. ACGTACCGGCCGGTGGTTGGCCGGTCGCCCTTGGCCTG 99179 29 86.2 36 ........AT............G.T.... ACGACGGGCGGGGCCGCGCTGCCGAACAGGTACAGG 99114 29 93.1 37 .....T.........A............. CTGGGCGATGAACTGATTCGTCACGCCGCATCCTCCG 99048 29 89.7 0 ........A............A.A..... | ========== ====== ====== ====== ============================= ========================================= ================== 14 29 97.8 37 GTCGTCATCACCCCTGGAGGGGTCGCAAC # Left flank : GGGCTGCCCCTTCCATCCCTCATCGTGCAGTGACCTGGCCATGGCGGCGTCCTGGCTGCCCAGCAACTCGTACATCACCGCGCGCGCCGGCCCGTGCACGTACTCCCAGCCCATGCTGGGCACATCCGCGGCAACGTCCACTCTGACCCGCACAACACCCCCCCCAGAGCCCTACGTATTCACACCGTCGCGCCATGTCATCGGCGGCGGCAGCACAGAAACTAGCGGATCAAGGGATCAAGGCTTCGCTCTCTACCAAACACGCATGAGATTTCCCAGAACGTGCTATACAGCGGCGCTGCGCCGTCGAGTGCCTGCCACCTCTGCCTTTCGGACGCTGACAGCCGTAGGCTGGTGGACCACCGACGGCCCCTCCCTTACACAGTCCGAGCAGTTCCCTCAATGCTCTGACCAGGGCTTATGTACTACCGGCGAGTTGCTGCAGAATTGGCACGGTGAGACGGGGGCACGGGGCCCGTGACCAGGGGCTTTACCCTCGG # Right flank : TAGCCCTTACCGGGCCCCGTATTACGACAGCGTCTGACCTGAGCAGCCCTATGGCGGTGCAGCGCCGCAGTGCTCTGCTGTAAGCCGTGATCGACCCAGGGTGTCATCCACCCCAAGCTTGACCGGACCAGCGGCCTTGCGGACTCGTCCAGTCAAGACTGGCGATATCACCCGTCTTGACCGAGTGGAAACAGACACCGTTGACACCATACCGCTCGCCCCCTCCACCAGTTCAGAGTAGAATGCCGACCATCTCATTAACCCTAAAGGGATATAAATGAGGGCTCCACGCGGTCGCCAGAGCACATAATAAACTCTACAGAGTAACCCACCAATCGCCCGTTAGTCGCTCACGCGACTAACGGGCAAAATTTTCCCCTCCACACCAAGCGGACTCACCTGTAGACCTGAACCCACAGCCAGGTACCCAAAAATTTAATTCAAAATAAAATCCTATAAAATTTCACACACGCACATTGCCGCCCTCGTCGCAGAATGCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCACCCCTGGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 108402-109079 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCJ01000026.1 Streptomyces sp. ScaeMP-e83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 108402 29 100.0 35 ............................. ACGACGTCTTCGACTCCCCGGACGCCGAAGCCTCC 108466 29 100.0 36 ............................. CGGTGGTACGTCGCCATCTCCTCGAGGAGGGCGGTG 108531 29 100.0 37 ............................. ACGGCACCTGGACCCGCTGCACCCCCAACGCCGACGG 108597 29 100.0 37 ............................. CCGTGCTCGCGGCACAGCAGGACGTCGGAGAGGTCGA 108663 29 100.0 37 ............................. ATGATCCGCCCGCCCGCCGACGTCCAGGCCATCGCCA 108729 29 100.0 36 ............................. GCGAAGTTGCCCGCGGTATAGGTCGTCCGCTCCAGG 108794 29 93.1 35 .....T.................A..... GGCTCCTGGCGGTGGATGATGCGGGTGGAGCAGTC 108858 29 93.1 34 .....................A.G..... CCGAGTGGCGGGACGACTCCCGTGTGGCACAGCG 108921 28 82.8 35 .........G....-........A..CG. ATCCGCTGCGACGTCAGCGTCAGCAGGCATGCCGC 108984 29 89.7 38 .....G..A...................G GTCCAGGTGAGCATGTACGCGCGGCCGCAGGTGCGGGG 109051 29 82.8 0 .G...G..T..G..........G...... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 94.7 36 GTCGTCATCACCCCTGGAGGGGTCGCAAC # Left flank : CGACGACGGTCTACCACCGCACTCTCAAACGCAAGGTCAGTTACGAGGAACTCATCCATCTGGAAGCCCTCAAGATCGTCCGGATGTGTTTGGAAGACCGCCCCTACAAGCCCTTTCGGCCCTGGTGGTGAGCGGCCATCTTCGTGATCCTCGTCTACGACACTGCGGTTGAACGTAACCCCAAGGTGCTCAAGACCTGCCGTAAGTACCTCCACTGGACACAGCGCAGCGTCTTTCAGGGCGAGCTCAGCTCGGCGCAGTACCGTGCGTTGATGGCGGCGCTGAATTCCACGATCGACCCGGACTACGACAGCATCGTCACGTACGCTGCCAGATCCCCCGACATGATCGAATCCAACACCCTCGGCGTTGACCTGGGTGGCCCTGGCGATATCCTCTGAACCCTCTTGACCTGCGCTGATGCACTACCGGCGGACTGCTGCAGAATGGCCGCCTAAGCGGGACGGGAGGAGGGCCTTGAGCTGCGGCTTTACTCTCGG # Right flank : CGCGTGTCTCGCGATCGGCTGGCGTTCCCGTGCCTCGCCGTCATTGTTGTCCCTGGAGGGTGCAACGCGTATCAGTTGGCCCGGTGTTCTTTGTCCGGACGGTCGTCAACTCGCTCGTGGGTGACATCCGTTCGAGACAGGGCGCGTCCGGGCGGTCTGCGACCTACTCGCTCCGCACCGGCTGCGGGGGCCAGCCGACCACCGCGTCTGCTTGGACGTTGCGCAGTGACGTTCCCTCGAAGCGGGCGCCTGTGATGTCTGTGGGGCCCAGGCGGGGGATTCCTGTGTTGACGCTGCTCAGTCTGGCGCCCGTCAGGTCCGTGTCGCGGAGGTCGGCGTCGCGGAGGTTGCAGCCGGCCAGGACCGCGCCTCGTAGGGAGGCTCCGCGGAGGTCGGCGCCGGTGAAGTCGCAGAACTTGAACCAGCAGCCTTCGAGGGTTGCGTGGCGCAGGTCTGCCCCTGCGAACGAGCAGCGCGCGAAGCGCAGTTGGTTCGTGCGG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCACCCCTGGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 217366-216974 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCJ01000093.1 Streptomyces sp. ScaeMP-e83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217365 29 100.0 32 ............................. GCTCGCGTTCTGCCCTCAGCGCCTCGCGGTCG 217304 29 100.0 32 ............................. CGGGAGATGGTCCGTCCCGACTGGATGCACAA 217243 29 100.0 32 ............................. GTCACCTCGCCCAGCGTGGTCGTGTACTCGCC 217182 29 96.6 32 .........................T... CTCCGCCAGCTCCGCAGCGAAGGCAAGAGGAG 217121 29 96.6 32 .........................T... ACGTAGCTGCGCAGTGTGCTGCCACACCCCCC 217060 27 89.7 32 ..............--.........T... GATGGCCACGGCAGCAACGACCGCGAGAGGGA 217001 28 89.7 0 ......................-.T..G. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGGTCCCCGCGCGTGCGGGGGTGGCCCC # Left flank : GCGCGTGCGGGGCGGTCCCTGCCGCACCGCCCGCACCCGAGCGCCCGAGG # Right flank : TAGTCGTGCCGGGTGCTCACCGGCCGGGGTCTCCTCGCTCGGCCGGGGCTCGGGGCTCAAGCTCCGGGCCCCGAGCTTCGGGGGCGGTCGGTTCACTCTTGCGGGGTACGCGGGGCGGGGCCTGGGCCCGAAGCCCGGGTCTCGGGGTGCGGGTGTCGGGATGCGAGGTTCGGGGTTCGAGCGCCTTCTGTAACCGGTAGGTGGGGGAAGGGGGTTGGGGAAAACCTCCCCTACCTCCCTGACCTGTCACGGTGAGCAAGTATGACTAATCGTGACAGCTTGCGGCGCAGCGTCACGACTGCTTACGGTTCGAGAACCAAGCGACCCCGACACGGTGTTGGAAGCACCAGGCCGGGGTCTCACCGCACGATCGAGACAAAGGTCGATCCCGTGGCTACCCAGCACCTTAGTCCTGCCCTGCGCACCGCCGCACGGCCCACCGCGTACCCGATGGCCAAGCCCGGCTACGGCAAACGCACCGCCCCGGACCAACGTCCCCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGCCCC # Alternate repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7416-6961 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCJ01000022.1 Streptomyces sp. ScaeMP-e83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7415 29 100.0 32 ............................. CCGACACAGCTCGCCCTCTGGGCCGGCTCGGG 7354 29 96.6 32 .C........................... AAGCTGTCCAAGGCTCGGGCCGAGGCGAAGAA 7293 29 100.0 32 ............................. TCGACCCCGTTCAGCTGCACTCCGTTGATCCA 7232 29 100.0 33 ............................. CCCCCAGCTGGCCGCTCGCCTGCTGGACCTCTC 7170 29 100.0 32 ............................. GCGGCCGACCAGGCCCGGCCGTGGCTGCGCCG 7109 29 96.6 32 ......................C...... CGGCACCAACTTGGTCACCGATTCCCTTTGGG 7048 29 100.0 32 ............................. GGCGGATACTTCGTCATGAACGCCCAAATGCC 6987 27 82.8 0 ...........A.A.......C.--.... | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.0 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : AACTCTCCGTAAGCCGGGGCGCGGAACGCGACCAGAACTGGGCGGGCTCGGACGCGGAGTCGATCCACCGCGACCGCTACTTGGCGGCCGAGCGCCTGTACCTGAAGGAGGTGGACCCGCTGCCGAGGATGGACGCGGTGGTGGACAACAGGGACTTCGGCCGGCCGCGCCTGATCACGGCCAACTCTGCTTAGGGGCCGCCCCGCACGCCCGGCGCCCTCGGCTTCAACGACCAAACCGGGCGCCCGTCTTGGTGGCCCTCGGAGGTGACGCCGCCCGGGTGGGCGACCGGCCGCTGTTGGGGTTGAGTGCGCTACGGGGAGGGGGCATCGAGATCGCTCGGGTTCTTCGGTGGGGCGGGTGACAGGGCGGGGGCTGGGGCAGGATGGAGGCTGCATGACTTCCGGCGGGGCCTCTGACAGGACCGAGGAGATATGTCCGATTCTCAGGAAGTGACGAAAAACGAGCCCCGGCCCACATAAACCCGCAGGTCACGAAGA # Right flank : ACGCCCCCCCGAGCCCTGCACCGTCGACCCGCCCCAGCGCGGCGCCCCGCCCCGCCCACGAGGAGCCCCTAACTGGAGTCACCCCCTGCTGGGTCGAATGATTTCGCGGGGGTCGCGGAGCCAGACGTGCTGGCCTCGGGCGGTCACGGTGAGCCCGAACTGTTCGGCGTCGGGTCGCCCGGCTGTCTCGTACTCCCACCAGGCCTGTTCGATCTCCTCCCAGAGGAACCCGGGCCCGTACTGCCACACCTCCTCCCCGGTGGCGGCTGTGGCGGCTGTGGCGGCGGCTCCGTCCTCGCGGGTCGCCCAGACCTGGACGCCTTCCGGGGTGTTCTGGTGGATGAGCCGTACGCCGGGCAGCCGCGCCCCGGCGTACAGGGCGAACCCGAGGTCGAGGAGCCGGGCGGGGTCCAGGCCGGCGGCGCGGGCCCGCCCCTTGCCGTGCACCTCGTGGAGGTCAGGCACGCGGTGGGAGCGCATGGGCATGTACGTGGCCCCGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //