Array 1 197701-198246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYE010000002.1 Listeria booriae strain FSL L7-0256 NODE_2_length_736030_cov_53.745921, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 197701 30 100.0 35 .............................. AAGATAGGAACTGATTGGTATACTTACTTGTCTTC 197766 30 100.0 34 .............................. GCGTTTGGCTTTGTTCAGTTGCGGCAAGTGTTTA 197830 30 100.0 34 .............................. GCAGAACCTGAATAAATATCTTTTTCTGAAATTT 197894 30 100.0 35 .............................. GAACTCGCGCATGAGATTGGTCAACAACTCTTAGA 197959 30 100.0 36 .............................. CACAATACCGCTCTATCCAAGTTGGCGGTACTTCGC 198025 30 100.0 34 .............................. TTTTAAATAGCCCGATTCTCTATGACAGGTCACA 198089 30 100.0 34 .............................. CAGCAACTGCAATACAACTCACTACGACTATTTT 198153 30 100.0 35 .............................. TTTTCAAATGTTGCTTGAGTGCCTAGCTTCGGATT 198218 29 76.7 0 CG...............A..-...C..G.C | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 97.4 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGCCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGTTGATAAGTGGTGTTTGGAAAGGCGGGGATAAAAATCTGTCGACCGTCGATAGCGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGACTAGATTTGAGACCGTTTTTGGAGGTTGGGTTGTAAGGTTCGGGAGCGGAAATTTAGTATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : CTAGATGGCTCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCAAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGAATTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTATTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATTGCTGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 18881-20093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYE010000004.1 Listeria booriae strain FSL L7-0256 NODE_4_length_296379_cov_57.864095, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 18881 30 100.0 35 .............................. TCTTCAAGCAGTCCTATATATTCGTCTAGCTCTTG 18946 30 100.0 36 .............................. AGCTTTCGTGACATGAACAATACGATTTTTAAAATC 19012 30 100.0 36 .............................. AAATATACGTCAAATGGTACAGTCATCCCACCTTGG 19078 30 100.0 37 .............................. CGCTATATTCTTGAAAAAGTATCTGATAAAGAGAAGG 19145 30 100.0 36 .............................. AGGATATATAGCACAAATCAATTTTGAAGGTACAGG 19211 30 100.0 37 .............................. GCAAAAAAAACACTCAACAATTCAGAGGAAAAAAACA 19278 30 100.0 36 .............................. ATTCACGATGTGACAAAGGATTATCGCTTATTGTTC 19344 30 100.0 35 .............................. CCGCTGTTTTCAAGCTCCCAATCGTTGGCTTTTGA 19409 30 100.0 35 .............................. TGGTAACTTAAACCAAATTGATTATGAATAAAATC 19474 30 100.0 35 .............................. TCTGCAGAACGGGAGCCATTGTATGTGAATCCTAC 19539 30 100.0 35 .............................. AATGGCAACCTAGCTACGCATAATAAAGGTTCTAA 19604 30 100.0 35 .............................. GTTATTAAGGCAGCTATTGATGCAATAGCACCGAT 19669 30 100.0 36 .............................. TTGAAAGCAGACTATGATGCTATATTTATTGATGTA 19735 30 100.0 35 .............................. GCAATATACTTGATTGCATTTTGCTCTGATTTTGT 19800 30 100.0 36 .............................. GCCGGAATGTCAGTTTTAAGACTAAATAGCGTACGT 19866 30 100.0 36 .............................. GCGTATAAGGACCAGCGATATATCGTTGCTCGATTT 19932 30 100.0 36 .............................. GTCGTTGGTGTTGCAACTACTGTGCCTGCACTGTTT 19998 30 96.7 36 .............C................ AAGGACAAGGGCCAAACGGTACACTTTATAAACTCG 20064 30 76.7 0 .......C.C.....C.A....GCA..... | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 98.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGGTGGCTGGAAAAGGAATTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGTTTAGAATGTAAGGTTAGAGACCGGAAATTTAGAATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGTTACCT # Right flank : TCAATCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAAGCAATGTTCGTAGCCAATGTACGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTCCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATTTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 22746-17105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYE010000005.1 Listeria booriae strain FSL L7-0256 NODE_5_length_215552_cov_69.252173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 22745 36 100.0 29 .................................... TTAATTGATTCGGGTTTAGAATCAAGAAG 22680 36 100.0 30 .................................... AATATTTGTTGGCGGTTTAGGTTTTGGTGT 22614 36 100.0 30 .................................... ATAAGTATTATTGATAACACAATTAACGCT 22548 36 100.0 30 .................................... TGATGATAGATGTTTTATAGACCCCGCATT 22482 36 100.0 30 .................................... AAAAACAAGAGGAACTATTACAAGCGCCGT 22416 36 100.0 30 .................................... GCGACAGGACAGCAATTAGACTCTCTAACG 22350 36 100.0 30 .................................... TTGTCGAAGATTTAATTGATGAAGATGGGA 22284 36 100.0 30 .................................... ACGTTTCTCCTGTTAGGCAGTCGAGGGCTA 22218 36 100.0 30 .................................... AAATTAATTATACCATAGGGGGCGCTTTTA 22152 36 100.0 30 .................................... CGATAGTAATGTGGTTCGACGTGATGCACT 22086 36 100.0 30 .................................... TTGTTGCATCGCATAGTAAGCGGTAGTTTT 22020 36 100.0 30 .................................... GAGACAAGGCATTGAGTGCTAGACTGACAA 21954 36 100.0 30 .................................... TGTAATAGTACGCGGCTTGGGTCACAGTTT 21888 36 100.0 30 .................................... TGGTAATAGTGCTTCTGTGCCACCTGTTGT 21822 36 100.0 30 .................................... GGTCTTTCATCATTTCGTCAATGATTACCA 21756 36 100.0 30 .................................... TTTGTGAATGGAAAGGAGATAAAAGGATGA 21690 36 100.0 30 .................................... TTACATTGTCAGGTTTAACAAGCAGTATTT 21624 36 100.0 30 .................................... TTGCAAAAAGAACTTCCTATTACACCGATG 21558 36 100.0 29 .................................... AGATGGCACAGGGTCTTTTGGTATTGATG 21493 36 100.0 29 .................................... TCATACATACTAACCCAGTTAATACCATC 21428 36 100.0 30 .................................... ACGAAGGTGATAACATTGTCAAGTGAACAG 21362 36 100.0 30 .................................... ACGTAAACTACTTTTTAGCTGGTATGAACG 21296 36 100.0 30 .................................... AATGATGACTATGAGTGGTGCAAAGAGGTT 21230 36 100.0 30 .................................... ATATTTGGTTCGAGTATATCTATGCAGAAG 21164 36 100.0 30 .................................... CAACACCTTAAAAGAAAAGTATAAGGAGGT 21098 36 100.0 30 .................................... AAATGGCAGAAATAACATCACACTTTAAGG 21032 36 100.0 30 .................................... TACATAAAAGAAAACCCCTACCTTGACGGT 20966 36 100.0 30 .................................... ACAGTGAGTACTCCCTATCAGTGTTGAGGA 20900 36 100.0 30 .................................... TTTACCATATCATCGCCACCCATTCCGTCC 20834 36 100.0 30 .................................... CAAAGCTCAATTCAAAAAATATCATTGGAT 20768 36 100.0 30 .................................... TGATATAGGATTATATAGAAGAAACTCGGT 20702 36 100.0 30 .................................... AATCAACTCTTTCGTCATACCAGCACTCAT 20636 36 100.0 30 .................................... TTCTAAGAGCAAACGATCTGTCAAAACTAA 20570 36 100.0 29 .................................... TAAAAAAGATGATATCAATTCCTACCTGG 20505 36 100.0 30 .................................... CAACAGGTCGAGGAATGGCTAAAGAGCCAA 20439 36 100.0 30 .................................... TTATCACCATTCAAAATTAGGAGGCGCACA 20373 36 100.0 30 .................................... TTTAAGCTCTCCATATATCTTTCTATTCAC 20307 36 100.0 30 .................................... CCGGTATATCTTCAGGCTTAGCATTCGTTT 20241 36 100.0 30 .................................... AACGTGATTATAAACACTATAAAGAAACTG 20175 36 100.0 30 .................................... CGGATAAATATCAGAAACTCTCAGAGTCTA 20109 36 100.0 30 .................................... ATCAGTTCAACTATATCTCACAAACTGAGG 20043 36 100.0 30 .................................... GCAAGACTATGACGCAGAATGAAAAGGCTA 19977 36 100.0 30 .................................... CAAAGGCTACTGATAAAACATCTGCCAAGA 19911 36 100.0 30 .................................... ACGAGGTCGAAAAGGAGCCGTTGTATATGG 19845 36 100.0 30 .................................... GGATCTAAAAAGGTTTGGCCTTTTTGTCCA 19779 36 100.0 30 .................................... TTTATTCTGATGACAAACGCGGTGCAGTTG 19713 36 100.0 30 .................................... ATAGCTTAGCAAATAGTGACATGACAACGG 19647 36 100.0 30 .................................... TTCGTTAGATGTAACAAATTCTCTTATTAT 19581 36 100.0 30 .................................... ACCACTATACCTATACTGATTATTGCCACA 19515 36 100.0 30 .................................... GTTTGATATACAAGAACCCAGATACTGGCA 19449 36 100.0 30 .................................... GCATCTGCATAGGTATAATAAGGTTTTCCA 19383 36 100.0 30 .................................... CCTTATCTAACTTACTTAAGCTTAGGCCCA 19317 36 100.0 30 .................................... AAAGCAAGAACGTTGACAATCACATATAAG 19251 36 100.0 30 .................................... ATGTATTATCAATCGATGATATAATGATAG 19185 36 100.0 30 .................................... GAAAAGGATCAACAAGTGTCATACACGTCG 19119 36 100.0 30 .................................... GGAGGATTTGAACTATCTGACTTAGATAGT 19053 36 100.0 30 .................................... AGAGTTCCTTTGTACTAGTTTATGGTACAC 18987 36 100.0 30 .................................... TCATTTTCATAGGTAAAGGTGGAGAAGGTA 18921 36 100.0 30 .................................... TACGCGGAGAGAATCGAATAAAGACCATGA 18855 36 100.0 30 .................................... AATGAACTCCATTGTACAACCTACGGGCAT 18789 36 100.0 30 .................................... GTACCTCGTACAATACAGGGTGTGAAGCAA 18723 36 100.0 30 .................................... AAACGGCGAACGATGCGTACACGAAGGTCA 18657 36 100.0 30 .................................... ATCTGGCATGGCACATTCCTAAACGTTCAT 18591 36 97.2 30 ...............C.................... AATCTCGGGTAGACGTTACTACACCTGAAT 18525 36 100.0 30 .................................... CTCTTATAATCCAATCATGTTTATTCCAAA 18459 36 100.0 30 .................................... ACGATGAATAAAAAAGCTAGTTCCGTGCGT 18393 36 100.0 30 .................................... AAATATCGTAATAATGAGGATTAATGGGGA 18327 36 100.0 30 .................................... TGAAGGCTGGCAAAATGAATAAATATACCA 18261 36 100.0 29 .................................... CCCACAGCGATATAAGTACTTATATCTAG 18196 36 100.0 30 .................................... ATGGAACAGTCAAATACGACGAATTGTTAC 18130 36 100.0 30 .................................... AATTGAATAAGACCAATAAGCCTCTCACTG 18064 36 100.0 30 .................................... GTGGGAAAGCTTTGGATATTAAGGCGATGA 17998 36 100.0 30 .................................... TCCAAGTTGAGTACGAAAAATACATTGCTT 17932 36 100.0 31 .................................... ACGATGTCCCTTGCGCTCACAGCTATCTTAG 17865 36 100.0 29 .................................... ACCATGTGAGCTAGAATTAACGTACCCAA 17800 36 100.0 30 .................................... GGCAATAGCATAATCTACTTTTCGTACCAT 17734 36 100.0 30 .................................... GCAAGGAAGATTTATACGTCTTTTCTATTG 17668 36 100.0 30 .................................... ATGGAACAGTCAAATACGACGAATTGTTAC 17602 36 100.0 29 .................................... AGGTAAAGCCTTAGATATTAAAGCCATGA 17537 36 100.0 30 .................................... CTAGGTGTTGCCATTAAATTGCTTCTTTTA 17471 36 100.0 30 .................................... GTAATCGCGAAGATATAGCACGGGCTCTGC 17405 36 100.0 30 .................................... GTTCTGCCTTATATACGCGGTTATTTTAGT 17339 36 100.0 30 .................................... TCCCCAATACGGATACCAAAATCTTTTGTA 17273 36 100.0 30 .................................... GTAAAAAGCATGAGCGCAAGTACACACCTG 17207 36 100.0 30 .................................... CGTTACACCGTGATTGTTTAAAACGTTTGG 17141 36 77.8 0 .......................AAA.G.C...CCA | C [17108] ========== ====== ====== ====== ==================================== =============================== ================== 86 36 99.7 30 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATATTGGGTATGAGTATAACAAAGCCAACCCTTGTGTTTGTGGAGGGATTTAGATCTGGTCTGAATGATATAGAATGTGCAAATGCAGAAGGAATGTTACAGAAAATGGCTAGAAGAGGTATGCATGTCATTGTACTTGACGATAATTTGGTAGGTGCTTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAATTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAACTCTGAAGACTTTCTGCAAGCGATAAATTGGTCTATAGAGGCTGTGGATAAGTCCAAGGGGAAAGTAGTGGAATTGGAGCTACAGTCTGTGGATAACTTATGTATTTTTACATTGATCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGT # Right flank : TGGGCTAAAGAGCAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCGACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAACTAAACGATACAGAAATGACGATTTACCACTATGTAGTCGGCAATTTGGACACGGCTATTTACATGCGGATTCGGGATTTAGCCGATGCAACTCATGTTAGCACAACGACGATTTTACGATTTTGCCGGAAGTTTGGATGTAACGGTTTTTCCGAGTTTCGTGTGAAGCTGCAAATGTATGCGCAGAATCGGACGAAAATAAGTGTGGACATGTCGGATGAGACAACGCATATTGATTTTCTAAAACGCACAGCTCAGCCTGAATTCAAGGCGAATATTGCCCAGTCTGCGAAAATTTTACGCGATGCAGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCCGGAATTATCGCTGAATATGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 105481-107153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYE010000008.1 Listeria booriae strain FSL L7-0256 NODE_8_length_156228_cov_60.294779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 105481 30 96.7 34 ..............G............... ATGCCATACGAGTGAAACGGTTAATGCCTATTAC 105545 30 96.7 35 ..............G............... TTATTCAAACGTATATGACGGTAGTCAATGATGCG 105610 30 96.7 35 ..............G............... AGATGAGCCGACAGATTTATTACAAGAGAAAAAAA 105675 30 100.0 35 .............................. ATGTTTGCTAACTTGCCAAACAACATCGCATTCTT 105740 30 100.0 37 .............................. TGACATACTGCGCTTTTAATCGTTTGACGCTATCGCA 105807 30 100.0 37 .............................. AACCACGCGTATCAATACACTGCGGCGGAGTATATCG 105874 30 100.0 36 .............................. TTGCCTTTATTAATCAGATATTCATCACTATATTTC 105940 30 100.0 36 .............................. GCAGATAAAATAGCTATTCAGGCATATAAACGAAGT 106006 30 100.0 37 .............................. CGTGATGAATCAAAAACAATGTCCCCTCTGCGGAACG 106073 30 100.0 36 .............................. TCCTTTGTTCCGGCCTCTAGGATAGAGAACATCTCA 106139 30 100.0 36 .............................. CGGTTTCCGGGAAAATGTAATTCCTCTAGCATCCAT 106205 30 100.0 36 .............................. ATTTTATTGGCGTTTCGTGGAACACGGCACTGTGAA 106271 30 100.0 35 .............................. ATAAATGATATAAATGTTGATATGAGATACCCGCC 106336 30 100.0 36 .............................. TATTTGAATTCATTCTCGACTCAGAAAGTGAATAGA 106402 30 100.0 36 .............................. TGTATTCTTCTGCTGTTAGTAATTCGCGAAGTAGTT 106468 30 100.0 34 .............................. ACCTAACAAGCTTAATTGACTCCAAAGCCGCTCA 106532 30 100.0 36 .............................. AGATCCGTCAGTTGATATTACTACAGTGGGAAATGT 106598 30 100.0 36 .............................. GCGTTAGTAGTCGTGTCGAAGTGTGTAGACGAGTTT 106664 30 100.0 36 .............................. CTATTACCTTGCTAACTGATTCTGCTTCTCTTTCTG 106730 30 100.0 36 .............................. TTTGATGTCAAGCCGAGAGCAAGATAGGTTGTGGCA 106796 30 100.0 36 .............................. TCCAGTACGCCCGGCTCTGTTCCTGCATCGTCTTCG 106862 30 100.0 36 .............................. ATCTTTGCCCCAACCAAAATTGGATTTACTAAATTT 106928 30 100.0 36 .............................. TCGTGCTTTTTGATTACGGATATTGAAAAAGTGGAG 106994 30 100.0 34 .............................. TCTGGACACCCAAACACCCCATCTGTAGCATCAG 107058 30 93.3 36 AG............................ TAGTGTGCCAGTGCGCCACCTAAACTGTGCCCTGTA 107124 30 83.3 0 .................C.A....A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 98.7 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : CGACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGACGCGGATATCGTTCTAATCGCCGTCGGATTCGCAGGTACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGACATCGACAGATTTTGTTTTTGCATAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGTGACTGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTAGGGTGTTGAGGTATGATGGGAGTAAGAGTCGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACATATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATACGCTCACCTTCTCGCAAAATACCTAAATAAAAGATGAATAACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAATCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //