Array 1 47747-45677 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFBQ01000005.1 Acinetobacter baumannii strain TG87880 Acinetobacter-spp-TG87880_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47746 29 100.0 31 ............................. ATCTGTACGTTTGGGGAAAAGGCTCGTCCAA 47686 29 100.0 31 ............................. GTGTTTAGAGGACTGAAAGTTCGCATAATAA 47626 29 96.6 31 ............................T GAACGAGTAGGAGCAGCAAGTAAAACAAATT 47566 29 96.6 31 ............................C CTCTTTAGCTAACTGGTATGCCCTATCAGCA 47506 29 100.0 31 ............................. TCTTGCATGTCGTAAATTGAACATTCTTTGA 47446 29 100.0 31 ............................. CGTTTTACGGCCAAGTCCCGTTCTTCTTCGT 47386 29 100.0 31 ............................. CGCAGCCGTCGTTATTCGAACAAATAATTAC 47326 29 100.0 31 ............................. CTCGAAAGGTTCATAAGGCTTAGCGCCCAAC 47266 29 96.6 31 ............................G GCATCAACAGGCGCGGCTCCTTATCCGGGAA 47206 29 96.6 31 ............................T CAAGCTACTCCAAATCCGTCTGAAACGATTG 47146 29 96.6 31 ............................C AATACACCAGTTCCTTTAAGAACATGTAATA 47086 29 100.0 31 ............................. GTTTTGAACACGATGAGACCGATAATTAAGC 47026 29 100.0 31 ............................. TACCACTGACGATGATGATAACGATGTGACT 46966 29 96.6 31 ............................G GCCTTGTGTGTTGTCACCCCCATAGGTGCAA 46906 29 96.6 31 ............................T GAATTTCGTCACGTAAGCCCATATCATGCCC 46846 29 100.0 31 ............................. GGACATAGTGAACTTGGTACAGGCAATATTT 46786 29 96.6 31 ............................C TCATGACGATGCTTTTCTAACAAAGTCATCC 46726 29 96.6 31 ............................G TTAGCTAAAGGTCGTGTGATTAAGTGCAACT 46666 29 96.6 31 ............................T ACGGGTTGTGGCTCAGATTATGTTCCGGGGA 46606 29 96.6 31 ............................C AAAAGCTTCCCTGATTTTTACCGATTAGCAT 46546 29 96.6 32 ............................T GCCAGCACTTTCAGACCATCCGATTTTCATGG 46485 29 96.6 31 ............................T CTAAAAGATATGTTGGTTCATGAGCGGCTGC 46425 29 100.0 31 ............................. CATGAATATGCAGAGATGTGCCGCCGTGAAG 46365 29 96.6 31 ............................T GAAATCGCTAGTTATGCGTTTGATGTGCTTT 46305 29 100.0 31 ............................. ACCAAAACCACTGAGACACTTGATTTAGTGG 46245 29 100.0 31 ............................. GGTCCACATGAAAAACTAGCTTCCACGACAT 46185 29 96.6 31 ............................T AAAACCGTCTATATGTTCTACCGTAGCAGTA 46125 29 96.6 31 ............................T CAAGAATTAAAGGAAATGCCCCAAACTCAAC 46065 29 96.6 31 ............................G CACGAATACGCTGAGATGTGCCGCCGTGAAG 46005 29 96.6 31 ............................C TGAACAGTATGCCGATTTAATGAATCCTGAA 45945 29 100.0 31 ............................. GTTACGCAAAAGCCAGTTGATTGTTATGTCT 45885 29 93.1 31 ............G...............T ATCATTGCGCGACAGAACGCATCAATTAATG 45825 29 86.2 31 ...GC.......CC............... GATCTATGCAAGATTTATTGGTCTACATTAG 45765 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 45706 29 82.8 0 .G..G...................AT..T | C [45701] ========== ====== ====== ====== ============================= ================================ ================== 35 29 96.9 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAACAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTCGACCTCGCTGATCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGATATATGTAGTAAAATCAAATAAAATCATATATTTAATCTAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAAGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACAT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52837-53943 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFBQ01000005.1 Acinetobacter baumannii strain TG87880 Acinetobacter-spp-TG87880_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52837 28 100.0 32 ............................ TTAATGAGAATTTTTTTGACATTCCCCCCTAA 52897 28 100.0 32 ............................ TTATCCGGTGCAAAATAATAGCCTAAGCAGCT 52957 28 100.0 32 ............................ AAATCTAATCCGACAACCAAAACAGTTAAACC 53017 28 100.0 32 ............................ ATATGAATGACGCTGGTACATATCCAATCGCT 53077 28 100.0 32 ............................ TCCAGCTATTCCACCTGAGAGTAGTACTATTT 53137 28 100.0 32 ............................ TGAGCAGGTCGGTTATTCTGAACCTGAAAATA 53197 28 100.0 32 ............................ ATAGTGGAAATACACGTAAGTTATTGATTTAT 53257 28 100.0 32 ............................ GATTATTTTTATGTCACTAATCCAAATCTTGG 53317 28 100.0 32 ............................ TTATTTGCAGCGTTTAATACAGGCGTATTTGT 53377 28 100.0 32 ............................ TTACCTACGAATGAAACAGTTCAACTTATTTT 53437 28 100.0 32 ............................ GACACCCCAGCATCATTGGGAACACAAATTAT 53497 28 100.0 32 ............................ TGGTCTGGTGGGCGTGGTGGAAAGCTGTCAAA 53557 28 100.0 32 ............................ TTAGCAGCATTCGCATTTGCAGTTTTGTTTTC 53617 28 100.0 32 ............................ CTGAGCAGTTGTCTGGTTATTCTGGTTTGAAT 53677 28 100.0 32 ............................ CAAATCAAAAGTGCAGTTGCTGCCTCAATAAC 53737 28 96.4 32 ...A........................ TGAGGGTGCCACACATTGGCAGGTTGGAGTGT 53797 28 96.4 32 ...A........................ TCTTCATCTGTTACATATGAAGCAAGGATCTT 53857 28 96.4 31 ...A........................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 53916 27 78.6 0 A..T........TC........C.-... | A [53920] ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.3 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAGGCCGTTTTACCTGCATTTGCCTGATAATCAGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTAAGATAAGGTAAATCAAGTGCTTGTTGCTTACTTAATCGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGCACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGTTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : ATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCATCCCAGCATTTTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //