Array 1 252303-250196 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPG01000002.1 Salmonella enterica subsp. enterica serovar Cerro strain NY_FSL S10-939 NODE_2_length_697498_cov_34.7289_ID_2422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 252302 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 252241 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 252180 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 252119 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 252057 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 251996 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 251935 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 251874 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 251813 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 251752 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 251691 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 251630 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 251569 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 251508 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 251447 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 251386 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 251324 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 251263 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 251201 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 251140 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 251079 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 251018 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 250957 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 250896 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 250835 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 250774 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 250713 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 250652 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 250591 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 250530 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 250469 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 250408 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 250347 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 250286 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 250225 29 89.7 0 A...........TC............... | A [250198] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 269687-268561 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPG01000002.1 Salmonella enterica subsp. enterica serovar Cerro strain NY_FSL S10-939 NODE_2_length_697498_cov_34.7289_ID_2422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 269686 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 269625 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 269564 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 269503 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 269442 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 269381 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 269320 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 269259 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 269198 29 100.0 31 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTG 269138 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG A [269137] 269076 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 269015 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 268954 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 268893 29 100.0 31 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTG 268833 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG C [268832] 268771 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 268710 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 268649 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 268588 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //