Array 1 98208-100310 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPC01000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ABBSB1113-1 NODE_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98208 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 98269 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98330 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98391 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98452 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98513 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98574 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98635 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98696 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98757 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98818 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98879 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98940 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 99001 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 99062 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 99123 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 99184 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 99245 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 99306 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99367 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99428 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99489 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99550 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99611 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99672 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99733 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99795 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99856 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99917 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99978 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 100039 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 100100 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 100161 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 100222 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 100283 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116443-117247 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPC01000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ABBSB1113-1 NODE_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116443 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116504 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116565 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116626 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116687 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116749 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 116852 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 116913 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 116974 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117035 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117096 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117157 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117218 29 96.6 0 A............................ | A [117244] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //