Array 1 1807-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOKQ01000268.1 Xanthomonas axonopodis pv. cajani strain LMG558 558_S3_L001_R1_001_(paired)_contig_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1806 31 96.8 35 .G............................. CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAG 1740 31 100.0 36 ............................... ACGTCGACCAGCACAATCGGCTCGCCGGCTTGCAGG 1673 31 100.0 35 ............................... GCGTACTGCACGCACGGCGTACATTTCGTAGGCGG 1607 31 100.0 34 ............................... CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTCG 1542 31 100.0 35 ............................... CTCCAGTGCCTCAAAGGCGGCTGCGCGCTTGTTCG 1476 31 100.0 35 ............................... CGCTGCACGGATGCGCCAGGCGGCGAGGCGATCAT 1410 31 100.0 36 ............................... TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG 1343 31 100.0 36 ............................... GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC 1276 31 100.0 34 ............................... CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC 1211 31 100.0 36 ............................... GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT 1144 31 100.0 37 ............................... GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC 1076 31 100.0 35 ............................... GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA 1010 31 100.0 35 ............................... GCGGATATGTGATTAGACCCTTTTACGACTTTCAG 944 31 100.0 35 ............................... ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC 878 31 100.0 34 ............................... TTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTC 813 31 100.0 35 ............................... CCGAAGTTGTTAATGGAGCCAGCCCCCTCGGTGTA 747 31 100.0 36 ............................... AACATCGAGGCCGCCGATTGCATGAGTGCGGAATCC 680 31 100.0 37 ............................... CTACCAATGCAATTCCGGTTGCGTGCAGACCTGGACG 612 31 100.0 36 ............................... TTCACCGCGCCTGACCCGAACGCCACGATGGGTGGT 545 31 100.0 37 ............................... TGCAATTTTTGCATTGGCGAGATGGGGCGTCTCGGCG 477 31 100.0 35 ............................... CCATGTGGATACGCTGGATTGGTGTTGGCCTCATC 411 31 100.0 34 ............................... TTGAACTGGAACGCCTTGTCGAGCGCATAGGCGG 346 31 100.0 35 ............................... TACGTGATCGATCCCAAGTCGATGCAGAACAACAA 280 31 100.0 35 ............................... GACGCGGCGCATCCGATCGCATTGACCGCTGAGGG 214 31 100.0 35 ............................... TGCAATCGCGCGACGCCTCGCCTATGCGCTCGTGG 148 31 100.0 33 ............................... CAGTGGCGCACTGCCTGCGCCTCAGAAAAGCTG 84 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 27 31 99.9 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTACGACGTCAGCACCAGCTCTCCCGGGGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAAATAAATACATAGCGGATTCACGGGGTCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGGGG # Right flank : CGGGAAGATCGGCGACCGTCTGTGGGTGCGGGAGAGTCGCGCCCTCACGGGCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //