Array 1 428031-429156 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRJ01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 83 NODE_2_length_697716_cov_19.4197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 428031 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 428092 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 428153 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 428214 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 428275 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 428336 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 428397 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 428458 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 428519 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 428580 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 428641 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 428702 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 428763 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 428824 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 428885 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 428946 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 429007 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 429068 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 429129 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 445415-447521 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRJ01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 83 NODE_2_length_697716_cov_19.4197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 445415 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 445476 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 445537 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 445598 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 445660 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 445721 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 445782 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 445843 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 445904 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 445965 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 446026 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 446087 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 446148 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 446209 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 446270 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 446331 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 446393 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 446454 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 446516 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 446577 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 446638 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 446699 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 446760 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 446821 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 446882 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 446943 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 447004 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 447065 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 447126 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 447187 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 447248 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 447309 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 447370 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 447431 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 447492 29 89.7 0 A...........TC............... | A [447518] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //