Array 1 114171-113784 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023682.1 Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 114170 28 100.0 32 ............................ AGCCCCTACTTTGATAGGGTCACCCTTTTTCA 114110 28 100.0 32 ............................ GCCGACAGTAAAGGTAAAAGGGTTTTAGCTGT 114050 28 100.0 32 ............................ GTGAAGATATTAGCTACGATATGACAGTTTTG 113990 28 100.0 32 ............................ AGCCCCTACTTTGATAGGGTCACCCTTTTTCA 113930 28 100.0 32 ............................ TTGCACGGCAGGAGCATTTTATGGCAGCAAAC 113870 28 96.4 32 .............C.............. TTTACACTACGGGCAATAATCGTTCTCGGTAT 113810 27 85.7 0 .............C.......A.C-... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CATCGCCTGCGCTCTATTCCGCTTTCCTATTTTCTTCAGGCACAAAAACAGGATGCCGCCGCCAATAATAACGGATAACTAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGGCGAGCTGCCTAATCTACATCAGGAGAAATAGCCAATATATTTCTGGATATATTGGTTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACGCCGCCTCAATTTTTGCCCCTAATTTGACCCTCTTTTTTCGAGACATTTAAAAATCTTTTAAAATCAACAACTTAAAAGCAAGCCTCTTTTTTAGGGTCATTTTGCTTATTTGGCATAATATCCCTTTATTTTAGGGAGATTTCTATAAATCTCTTCTA # Right flank : TTATCAAAACCGATGCCGATCATATCCCCACAGGCAGCCTTCAACATAAAAGCATTTAAAAACAACTACTTAACCACCCACATATTATACCCTTTAAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTATCGGCTGAGAGCAAACGGCCTCACGCCGCCGATATCTCCTAAATTTATCCTCCTAATAGATACATCCTGCCATAATGGGACAGCTGTCAGCTATCCCCTCAACACCACCGTTCTATTTCAAAACATTCTTTTCACTTTTCTTCTCACTATCCCGATAACCCTCATATCCTCTCTTTTCATCGCTGCGATCGCCCTCTTTTGATATAGATGCGAAACCACTATATTACGTCTTCACAGGCTGGCGATA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1245355-1245869 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023682.1 Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1245355 28 100.0 32 ............................ TAGCAGTGCCAGTGCTATCAAGAAAGAAATCC 1245415 28 100.0 33 ............................ AGATGGAACAAATGTGTGGTGGGAAAATACTTT 1245476 28 100.0 32 ............................ CCGTGCGTCATAGACACCGGAAGGTGCGCCGT 1245536 28 100.0 32 ............................ TTCTCAAAAAGGAAAAGAAATTGGAACAGATT 1245596 28 100.0 32 ............................ GTCGAATAATTTTAAGCGTGAACCCGTATCAG 1245656 28 100.0 33 ............................ ATCGAACTGCGTGCCTGATAGCCGATACGCTGA 1245717 28 100.0 34 ............................ GATCGCGGGCAACGGTTTATTCAGCTATCCGCGC 1245779 28 100.0 32 ............................ ATTTCGTCAGTGTCCGGAGAAACGCCCGTCAG 1245839 28 89.3 0 ............G.............TT | GTT [1245858] ========== ====== ====== ====== ============================ ================================== ================== 9 28 98.8 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGGATTAAACACCGCTGTATATTTTGAAGCATAGCCGAAATTGAGTTTAATTTTGGCCTGTTGCGGCATATCTGCCTTTGTAAGCCGTTTTAACCGCGGATAATGCGGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGTAATAAGAGCCATTCAATGCTGCCCATCGCTGAAGATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAATATTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCGATTCAATATGTTACATATGAGCATATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGCAATTCTATCTTTTGCCTCTA # Right flank : TTTATTGCATTGGGGTGGTTTTAAAGAGGGCATAAAGCCCTCTTTTTTTAAGATTTTTATTGAAAAAACGGTTTGTTTTTTATTAGGGATTAGTCTTCTGCAACGACGAGGTCGGTCTCTTTTTTGCGGCGTTTTTCGCCAAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACAATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGGGTAACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGAGCCGTTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATGGGCATGGCGACATAATAGGCCATAGAGGCACCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1598754-1599402 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023682.1 Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================================================== ================== 1598754 28 100.0 32 ............................ GCGCATCTTCTGATGCTTTTTTAGCTGCGGCC 1598814 28 100.0 32 ............................ TTGACGCTGTGAGCGTGACGATATGCTTTCAC 1598874 28 100.0 33 ............................ ATCGGGGCATAAAATAGCGACTTGCTCACCGAT 1598935 28 100.0 32 ............................ GTCTGGCTGAAATGAGGTCCGACGATTTGCAT 1598995 28 100.0 33 ............................ ACCCCTCTTGGTAGTCGTATCTGCAGACGCAAT 1599056 28 100.0 33 ............................ ATATAGAAGATTTATCAGATACGTTGAGAATAA 1599117 28 100.0 170 ............................ AAATGCAAGCAGAAAATGCGAAATATCAAGCCGAAGAAGATAGAAAAGCCGAAACTTTGGCTCTTGGAAAAGCTAGATCAGAAGTAAAGAATTAACCTAATCCTTGAGAAGATTCAAAATCTTTTATAAATACTGATTTTTAAAAATAAAAAGCTGGAAATAATCCACAT 1599315 28 100.0 33 ............................ ATCCGCAATTTCTGGAACATGATCTTGCTGACT 1599376 27 82.1 0 .............T......A..-.T.C | ========== ====== ====== ====== ============================ ========================================================================================================================================================================== ================== 9 28 98.0 50 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCCGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGATTTGAAAGAGGGAGTCCGTGAAAAGGCTCCCTTTTTTATTGATGATTATTGACAAAAAGTAAGTTTTAAGCGGCCAATTTTAGGCTTTTTTCTATTCTAAAAGTCGAGATTGAAAGGCCTATTCCTTTTGCAGATGAGACAGTGAGAATGAGGTTTTTATGGGTCAATCGGAATAATTATGATCGGTAGAATATGGGGTAAATAAATAACCTAATTTCATTCTTGCCATAATTTCCGATCGTTTCCTTTTGTAAAAGCCAAAAGAAGCGTTAAGATCACGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTTTATTTGACCCTCTTTTTTTGGCATGTAAAAAAATCCTTTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCTATTTTTGCCCGATATTCCTTTCATTTAGGGGGATTTTTAATTATTTACTCTA # Right flank : CTTATTTAAGTGTTGTTCTGTTTCATGGTTGGGGGATATTTTATCGGAGGCTATTCTGTTCTCAAAATATGTCTTCGGTACGTCTTTTTCTTCTCTGTTTTCTCTTTTTAGTTATTCCGACCAGAATAAGATTATTTGTGATTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGGGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTTATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCCGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGA # Questionable array : NO Score: 4.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-1.73, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //