Array 1 461141-462693 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXS01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3343 NODE_3_length_696322_cov_89.850017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461141 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 461202 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 461263 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461324 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461385 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461446 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461507 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461568 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461629 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 461690 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461751 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461812 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461873 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 461934 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 461995 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 462056 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 462117 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 462178 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 462239 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462300 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462361 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462422 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462483 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462544 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462605 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462666 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 479008-479525 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXS01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3343 NODE_3_length_696322_cov_89.850017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479008 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 479069 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 479130 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 479191 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 479252 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 479313 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 479374 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 479435 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 479496 29 93.1 0 ............TC............... | A [479523] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //