Array 1 1466209-1466542 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP023510.1 Rothia mucilaginosa strain FDAARGOS_369 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   1466209	    29	  93.1	    32	..A.....T....................	ATTGCGCAACGCTTGGGACTGACCCGCGCCGA	
   1466270	    29	  89.7	    32	..A.....T......A.............	ACTCTCAAGCAGAGCCAGGTCAGCAGACCGCA	
   1466331	    29	  93.1	    32	..............T.............T	GTAGGTTATGTAGCCTTAATTGATACCGTCGA	
   1466392	    29	 100.0	    32	.............................	GAAGCTCTGACACCTAACTCAAGCAACGGTCA	
   1466453	    29	 100.0	    32	.............................	CGCCCGATCACATCCTCAGTGAGCCCCATATC	
   1466514	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
         6	    29	  96.0	    32	GTTTTCCCCGTATGCGCGGGGATGAGCCC	                                	       

# Left flank :   GCCGGGCTCAACCGGTCCATTCTGGATGCCGCTTTTAGTACGCTGCGCCGTCAGCTGGAATATAAGGCCAGCTGGTACGGCTCACAGGTACAGATTATTGACCGCTTCTTTGCATCCTCTCAGACGTGTAGCGCCTGCGGAGCACGAGCGAAAACCAAGCTCGGACTCCACGTGCGTGTCTTTGAGTGCGCAGCCTGTGGTGTGCGGATTGATCGTGACGTGAACGCGGCACGTAATATCCGTGCGGAGGCTGTACGGATGTATGAGGCGCAACTCGCCCCCGGCACGGGGGAGAGTCTAAACGGACGCGGAGTCGCAGGCTCTGATGCTGCCGGTTTGGTGGTGTTGGGGGATGTGGCGTTGGATGCGTCAAGGCCAGCCGCCACTGGCGGCGGGTCACCGTAGGCGAGTAATCGTCTACTCATCCCTTTTATATGTGTATACGTGTGGAAACTGAATATTTTTAGGCTTCTGCTAGGCATCGTGCCTTGTGGCTAAGT
# Right flank :  CAGAGAGGTGTCGGGCTGCGTGCTCCTCATTCTGCGTACTTGCAGAAGTAGCTGGCGTGCGCCTAACCATTCATCCTCCGGTAGCTTCTGACACCCCACCAACCCCTCGCCTCCTGCCCTCGACGCTGCCCCCAGTAAAAACCCCCGTTAAAAACACGGTCGGGGCCGTCTCGCACGCAGGCTCGAAAAGTGCGAGAATGGAGCAGAAAAGAAAACTACGAAAGAAGATACTTTCATGCTTATTCTCGTTGTGAACGCCGGTTCTTCCTCCCTGAAGTACCAGGTGCGTGACACCTCCCTGCCCGAGGCAGAGCAGATGCTGACCTCCGGCCTCGTCGAAAACATCGGCACCGACGTGCCCAACCACGAGGTCGCATTCGACATCATGTCCGAGAAGCTCGAGCCCGTCCTGGCAGGCCGTGAGCTGCAGGCAGTCGGCCACCGCGTGGTGCAGGGTGCAGAGAAGTTCACCCACCCCGCCCTGCTCACCGAGGAAGTTG

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTCCCCGTATGCGCGGGGATGAGCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 92% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-10.60,-8.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0.78   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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