Array 1 32369-29094 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCFF01000001.1 Streptococcus ruminantium strain DTK397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 32368 36 100.0 30 .................................... ATAAACATGGAAAGGACTCTAACAAAAGAT 32302 36 100.0 30 .................................... TAGACATATAATCAATGGCGTTACCAAATG 32236 36 100.0 30 .................................... TCAATGGTATCGTGTCTCTCGTTGGACAGG 32170 36 100.0 30 .................................... AAAAATTTAGAATTTTTAAGCTATCACGGA 32104 36 100.0 30 .................................... TTCAGGATGAATTTCTCTTAACTCAAAATC 32038 36 100.0 30 .................................... CAAATATTAAAAAATAAATTGAAAAAATTT 31972 36 100.0 30 .................................... GCCTTGTTTGATTTCGTTTTTAACAGAATA 31906 36 100.0 30 .................................... ATTCATGCATGTAAAAGTTGAGAAGGATAG 31840 36 100.0 29 .................................... TCAAGTTGTATTTCAAGGATTCCGGTACA 31775 36 100.0 30 .................................... TTGTGAACATTTTATCGATAAATTCATCAA 31709 36 100.0 30 .................................... ATGATTTCCTCATCAGTGACATCATCTCTG 31643 36 100.0 30 .................................... CAACGTGCCCGTTTTCTATAAGCTTTCGCT 31577 36 100.0 30 .................................... ACTTTTCCTCTACAAAAATTTCGAAGATTA 31511 36 100.0 30 .................................... ATAGTTACATTATACGATAATGAGTGAATA 31445 36 100.0 30 .................................... TCGCCGTTAGTAGTCCGAACATAATCAGAA 31379 36 100.0 30 .................................... AGAAGGCTTCCCAACTGCCTACTAGGTTCT 31313 36 100.0 30 .................................... TAAAGAACTTCGAGACGAATTTAACGAACG 31247 36 100.0 29 .................................... AATGTCTATATTAGTCGGTTTAATGGCCA 31182 36 100.0 30 .................................... AAAATGGATCCATAACTATAGAAAGTCTAT 31116 36 100.0 30 .................................... AATTGACGGTGCAGGGTTAGGCTGAAACGT 31050 36 100.0 29 .................................... TTTTGAAATCATACTGTCCAACATGGCTG 30985 36 100.0 30 .................................... TCTCAGCATCAGTCATAGGCGCCCCGTTTC 30919 36 100.0 30 .................................... TGAAACAACCGAATCAAAACTGAAAATGTT 30853 36 100.0 30 .................................... AGAAAAAATGTTCTCCGAATTGAAGAATCT 30787 36 100.0 30 .................................... AAATTAAAAGATTGGCTTAAAACAGGGACT 30721 36 100.0 30 .................................... CACGCCCAAGACGTTACTGCCATCAAAGTG 30655 36 100.0 30 .................................... GCCCTCACAGCTATGTTGACGGTGCTTTAT 30589 36 100.0 30 .................................... CTACTCCACCAATTGCGCCCACAACCGGAA 30523 36 100.0 30 .................................... GCCGTGCCAAGTCAGGAAAATCTATGATGT 30457 36 100.0 31 .................................... TCTTCACCATCTACAATTACCTTTCTTAAGT 30390 36 100.0 30 .................................... TTAAGGTTGAAAGATTCCAAGAATTTATCT 30324 36 100.0 30 .................................... GGTACTTTTTAAGTACCTCAAAAAAGAAAG 30258 36 100.0 30 .................................... GGATTTAGGCGAGCGTATGGTTATTGGTCG 30192 36 100.0 30 .................................... AAACATGCTGGGTATTGGTATGACTCGTTC 30126 36 100.0 29 .................................... CGGTCTATGGAACAACCATAGGATTCGTA 30061 36 100.0 30 .................................... AATCAATGCTGCTAAAAATTTAATAATTTC 29995 36 100.0 30 .................................... CTACCTCGAAACCTAATAAACACCAGTTGA 29929 36 100.0 30 .................................... CTAGGTGCTGTAATTGGTAAAAGTGAACTA 29863 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 29790 36 75.0 30 ...C...G.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA AG [29781] 29722 36 100.0 30 .................................... AATTTTGCGGTAAGGTCAAGAAAAAAGTCA 29656 36 100.0 30 .................................... GGGTGGTTGGTTTAACAACAGTCCAGACGT 29590 36 100.0 30 .................................... ATAGTCATTACCAAAACACTCAATCACATA 29524 36 100.0 30 .................................... ATGATGGTAATAATATTACATCACTACCAT 29458 36 100.0 30 .................................... AACGAGGTAATAAAATGATGGTAATGTTAA 29392 36 100.0 30 .................................... AGTTCTTCAACATCAACCTCTTTACCCTCA 29326 36 100.0 30 .................................... TATCCGCTGAGTGCCTTCACCGTCCAGAAC 29260 36 100.0 29 .................................... CTGGGTTAGTAGTGACAAGATTATGATAG 29195 36 100.0 30 .................................... AATGCAGGCAAGAAGGTCAAAGGCGCAGTA 29129 36 88.9 0 ...............................CCCC. | ========== ====== ====== ====== ==================================== ===================================== ================== 50 36 99.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTCTGCGAAAAGTTAGTTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTCTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATAATTGGAATAAGAGAGTATAAAAATCATTTGAG # Right flank : CCTCTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGCAATGTAAGATAATTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //