Array 1 22664-23819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNKO010000002.1 Streptococcus salivarius strain 1001254J_160919_F11 NODE_2_length_231312_cov_68.949, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22664 36 100.0 30 .................................... CAGCAGTATCTAAGTTTGCAAGCTCTATCC 22730 36 100.0 30 .................................... CAATCACACGTACTTTGGTAGTGTCAGTTT 22796 36 100.0 30 .................................... TGTCATTTTCGGAACACTCAAGACTTCATG 22862 36 100.0 30 .................................... TTTCTAACAAAGACAATTACGACATCATGC 22928 36 100.0 30 .................................... TTGACAGCATCCCTTCCATTTGAATTGCCT 22994 36 100.0 30 .................................... CGAATTGATGCCATTGATTCGCTCCTCCGT 23060 36 100.0 30 .................................... TTTCTACAAGTTTAGCAGTTCAACGTGACT 23126 36 100.0 30 .................................... TGGCCGGAGCTGACATTTATTTGCTAGTTA 23192 36 100.0 30 .................................... AATACCGTTACCATCAATAGCCATTTCGTA 23258 36 100.0 30 .................................... AAGGTGGAGTTGAAATCACTCGTGATACTG 23324 36 100.0 30 .................................... ATTATTTATCCCCACGTAGCCATTTCACCA 23390 36 100.0 29 .................................... GAGCAAGCACGCTACTTCGACATCATTCT 23455 36 100.0 30 .................................... AAGCCGAATTGTACGGTGACAGAATTTTGT 23521 36 100.0 30 .................................... TACGCTCTTGTTCACCCTTGTCTCTGTTAC 23587 36 100.0 30 .................................... TTGATTTTAAAGCTAACGGATCAACACGCT 23653 36 100.0 30 .................................... GATAGGTACTAGACATGCCAAAGTATTCAT 23719 36 100.0 30 .................................... TGAGCAGTTTTGGACGGAAAGCACAACCCC 23785 35 83.3 0 T..........-.T...........G........GT | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTATTTCAGAGGAATCTTATGATAGTTTTTATAAGCAAATTGGTCAGCTAGTCAAAAAGTATCCAAATCTAAACTTAATTTTATTTCCAAGTAATCAAGGCTATTTAAAGATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAAGTGGAGCATTTGTACGATATTGAGTTTATGTATGACAGGGTAAAGAAACATTATCCAAGTAATAATTTCCCACCGAGAGAGGGTTTTAGGAAATCCTTAGAGAATGTGACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCACACTTGTTGATTCTGTAATTTTGAATATCCTAAATCAGCTGTTTCAATTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGGACAGTTATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTAATTCAACTAAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGGTTGTCAGGCTGTCCGACCTCTTTGACCTCAGTCAAATTAAGGATAGGAAGGCTCTGTTTGAGATTTTGATAGTAATCCACAGTGATGGTACCGGTGACTTTTACCCACGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATCCCAAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAAACAAATCCGGTATAGGTGACCTTCTTGCCTACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 91088-92641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNKO010000006.1 Streptococcus salivarius strain 1001254J_160919_F11 NODE_6_length_123223_cov_86.8244, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 91088 36 100.0 30 .................................... CAATCCTGACAGGAACGTGATTAGATATGT 91154 36 100.0 30 .................................... TTGGTGTCGTTGAATCCATTCTAGGTCACC 91220 36 100.0 30 .................................... GTAAGGCTAGCACTAGACTGTCAGGGGTCT 91286 36 100.0 30 .................................... AGCTTAAGTAGTGACCGTGGATACATCACA 91352 36 100.0 30 .................................... GTTGGGTGTGACCACACCAGACGCTCGTAT 91418 36 100.0 30 .................................... ATCAAGTAGAAAAATTGATTGACGAAGCAT 91484 36 100.0 30 .................................... CTCAGTTGATGGTGTTACCTCAGAATCATT 91550 36 100.0 30 .................................... CTTGATGATATTGAACCGCAGTGGAACAGT 91616 36 100.0 30 .................................... TATGGGTGACCGTTACGGGAATGACGCCGA 91682 36 100.0 30 .................................... CGACTATCGAAACAGAAAAAACATCCGAAA 91748 36 100.0 30 .................................... GCAGTCTAATAAATACGCGGTTGTACCAAT 91814 36 100.0 30 .................................... TATGGGCACTTTTACTTGACAACTAAGTGA 91880 36 100.0 30 .................................... GGTAGCTGATAGCCTTACATAAATAAAGAA 91946 36 100.0 30 .................................... CCTAACTATGAAGTAACACCTACTCCTTAC 92012 36 100.0 30 .................................... GAGCAAACTTTGGCGTGACGTGCACGTAGA 92078 36 100.0 30 .................................... CTCTTATAATCAATTTCTAAATTTTGTAAT 92144 36 100.0 30 .................................... CAGTGAGTAGTTGCCACGCTCTGCCACGTT 92210 36 100.0 30 .................................... ATACGGAGCGATTGATTATGCGAACGCTCT 92276 36 100.0 30 .................................... CGCAGGTAGCGCCTCGGGAGGCGACGGCTC 92342 36 100.0 30 .................................... ATTTCAATGTCAGCCAATTTCTCACAATAA 92408 36 100.0 30 .................................... TACAAGATGAATTTCGCACCATTGGCATTA 92474 36 100.0 30 .................................... TTCTAACATGGCGTCTGCAATTAACATAAA 92540 36 100.0 30 .................................... TGAACTAATTAAGACGATTGGAGAACACAA 92606 36 80.6 0 ............CC...............T..CCCT | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAGAGAATTTTGGTGTTCGTCAATAGTTTGTCGTATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGAAAGATTAAAGGTATTCAACAATTTATTTTGGATAAGGATTACATTTTGATGCCTTACAATAACTAGTAATTTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTACATGAAGTTGAGTGGAAGAATCATTTTGTTAGAGAGTAGGTTATAAGCTATCTGATAGGTGAGAAGGTAAGTTGATTGGAAAAAGATTTCTAAAATTTTTTCGATATAGCGACAGCTCTATTTGTTAAAACGTTGTTATATAAGGCTTTTTAAGGTATAATAAACATAAAAATGGAATCATTTTGAAGCTGAAGTCAGGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAGAAAAATGACCTACGAG # Right flank : TCTCTTTGTAACGATTTTGGGTTGACTTCTCCTTAAACTCATCCTATCATAGAGGAGTCTAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGACTTTGGCCGTAGCATTAGGGCAGATTCTTTGCCTCTTGCCATGACGAAAGCATCTGTGTTTTTATCACATATTATTAAAAGGTATGGAGATAAGCCTTTACCAGAGCCGACTGCGGTTAGCAGTATTCCTAATGAGGAAGAACTCGTCGTTTTGATTCAAACAGAGCTTGATTAAGACTAAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAGGACGACTAAAATGCCTGCAAAAATTTGTAGCTGCGAGAAGGGTTCTCCTAAGACGACAACAGCAGCTAGAATTGAGATAATGGTCGAAATCCCAATAAAGGATGCTGTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //