Array 1 176566-175928 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOE02000007.1 Caballeronia pedi isolate LMG 29323, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176565 28 100.0 33 ............................ CTGTATACATGGTTTAAAGACGCGCTGATACAA 176504 28 100.0 33 ............................ TGCCGCGCGTCCCATCAGCCGAGCGCGATCACG 176443 28 100.0 33 ............................ CCTCAGACGGTCGAGAATTACATGTCGCACCTG 176382 28 100.0 33 ............................ GACTACCACGACGCCCGGTTACCTCGTGGACGG 176321 28 96.4 33 ..........G................. CTTGTCGACCATCGACGCGACCGTGTTCTGACT 176260 28 96.4 33 A........................... CAAGCTGCCCGGTCAGTTCTGGGGCGAAGGTGT 176199 28 100.0 33 ............................ CAAGCGCTACATCAATCCCAGCTACTGGTCCGA 176138 28 96.4 33 .............A.............. CCGGTACGGCGCGCTGATCGACTATGAGGACTG 176077 28 92.9 33 ...........A.A.............. CTACGCCTATCGCTACGAGGAAGCGCGGCAGGA 176016 28 92.9 33 .............A....A......... CCCATGAGCAAGCGATTTCGGGCTGCTTACATC 175955 28 85.7 0 .........C...A.........C.C.. | ========== ====== ====== ====== ============================ ================================= ================== 11 28 96.4 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : CTGAAAGCCGCTGTTGGCTTTTCCGAAGTCGTGCAGATAGGCAAGCGCGGCAAGGCGCTCGATATCCTGCTCGCTCAATGGCCGGCCAGCGGCGGCGCACAGGGCAGCGTGAATGCGCCCGCAATGCGCGATCTCCATGAAGCATGCCGCCACATCCAGCATGTGATCGCAAAGCGGATGAAAGGGCGAGTGCTCGTCGCCGTCTCGCGGACGCTTGCCCCAGGCAGCGAAAGTACCGATTTTGTTTGCTTTTGATTGCATGCGCTGTCAGATCGCATGCACTTGCCTCGTATGGGAGATTTCAGGCAGCGATTCTTTATTTTGGATACCTATTTTTAACGCGAATGCCTTGCGCACTGCCATACGATTTCGCTGAGTTTCCAGCGCGGGTTCGGATGTTTGACAGCAGGGGGGTGGGTCGACATACTCTCGACCGCGAGGACAGTTCAGAACATCGAATTGATCGTTTGTTCTTTTAAATCACGAAGATAGTGGGTAGA # Right flank : ACCGAAGAACGCGGCCCCGGAAGGCGCAGACGCGTTACCTCCGCCCTCGCGGAGCCCAACCATCACTCAAACCGCACCCGCGCCGCTTTCACAACCCGCATCACCGCCTCCACGCTCAACCGCGCCGCAACCGCCTTCACATACTCATGATGCCGCGCCTCCAACGGCGCATCCAGATACTGCGCGTGCAGATATCGAATCAACGCAATACGCCGATGCTTCAACGCAATGCTCCGATCGAGCAACGCGAGCGCCGCACCCGCATCGTGCTTCTTGCAGGCACGTTCGGAAAGCTGCGCGGCAACATCGCGCGACGCATTCATCGCACGGACGCATGTTGCGCGGCGGCGTTCAACCGCCACGCGTCGTAATCCGCGCGCCGCCAGTCGAGTTCGAGCCCAAGCCGCTTCGTCCCTTCACGAATCTTCGGCTTGTGCAGCACGAGCGTGAGCGCATCGAGCGCGGGCCACTCATCGAACGACAGCGCGGCAACCTCGACC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 185623-186443 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOE02000007.1 Caballeronia pedi isolate LMG 29323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 185623 28 100.0 33 ............................ CGGTTTGTTCCATCTTGCTGGCCCTCCTTGGGC 185684 28 100.0 33 ............................ CCAGCGGCAGAGCGTTTGCAAAGACGGCAATGC 185745 28 100.0 33 ............................ CGCCCTCCTGATCGCCGCCGCACCAGAGCTGCT 185806 28 100.0 33 ............................ GCTGGCGGGTAGCTCGAGCAGCGCGAGCAGCTC 185867 28 100.0 33 ............................ CACGTACACCGTCACGTACGCGGGCGCAGCGTC 185928 28 100.0 33 ............................ CGTGACATTGACCGGGACTGACGGCTCGGTCTA 185989 28 100.0 33 ............................ CGCGGGTGTGGCGGCTTATGGCGTCTCGCAGGG 186050 28 100.0 33 ............................ GAACGAGGCCGGCAAATCGCCCTGGCCGGCGAC 186111 28 100.0 33 ............................ CGCCTTCCGAGCGGTGGGCTTAGCGCGGCGCCC 186172 28 100.0 33 ............................ CTGCCCGATCAAGGGCGTGCGCGTGTTCGAGGA 186233 28 100.0 33 ............................ TCCGCAAGCGTAAAGGTTCCGGGGGCTGGTTTC 186294 28 100.0 33 ............................ CTCGATGACGGCGTTGTGATAGCGATCCTGCAC 186355 28 100.0 33 ............................ GCACGCGCTGGTCTCGGCTTTCCTCGCCAAGCA 186416 28 89.3 0 ............AA...........T.. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : CTGGTGCGGCGTGAGGCGGCGCGCGTGTTTCGCAAGAAGGCGGTGATTCCGGCGATGATCGATCGCGTGAAGCAGGTGTTACGGCTGGACGAGAAGCTGGAGGAAAGCGATGGCGCTGGTCGTGGTAGTGACGCGTGATGTCGCGGACCGGTTTCGCGGCTTTCTCGCGTCGGTGATGCTGGAGGTATCGACGGGGGTGTATGTTGCGCCGCGCATGAACAAGGGCGTGCGCGAAAGGACCTGGTCCGTGCTTGCCGATTGGCATGGGAATGAGCCGCGGGGCAGTGTCGTGATGGTGTGGCGGGATTTGGATGCGGTGGGCGGTATCGGGATCGTGCAGCTCGGGGCGGCGTCGCGAGAGCTTGTCGATGTCGATGGGATGTATGTCGTGCGGCGGTTGATGGTGGGGTAGAGGCGCGTTTTGTTCTTTGAAAATTTGGGTTTTGAGATTGGGTGGGAATGGGGGATTTGCTTTTCGGTTCATGGGGTTATGGGGGAGA # Right flank : CCGCCGCCAAGTGGACTTATCGGCATAGCGTTTCGCTTTCTCCGCCTCAGCGGAGCCACTACGTCACACCCCCCGCCGCGAGTCTCTGCAAACCACGCGCCCTTTTCCCCTCCGCCACGAAGTACGCCGTAGCAACGCGACCCAGCGCCTCCCGCCCCCGAATCCGATCCGCGATCTTCTCCGCCAGCATGATCGTCGGCGCATTGAGATTGCCCGTCGTGATCTGCGGCATGATCGAAGCATCGACGACGCGCAGTCCTTCCATGCCGTGCACGCGTCCTTCTCCATCCACGACAGCCATATCGTCATACCCCATCTTGCAGGAGCACGAAGGGTGATAGGCCGTCTCCGCCTTCGCTCTCACGAACGCATCGAGCTCCGCGTCGCTTTTCAGGTCATCGGAAGGATGCAGCTCTCGCCCGCGATACCGCGCGAGCGCAGGCTGCCGCATGATCTCGCGCGTGATGCGAATCGCATCGCGGAACTCGCGCCAGTCGAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //