Array 1 562-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYU01000345.1 Salmonella enterica subsp. enterica serovar Vinnorrhady strain BCW_2812 NODE_345_length_616_cov_2.76661, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 561 29 96.6 32 ............................A TTTTTCCGGTATTTTCTTTTGCATGTCAGCGC 500 29 100.0 32 ............................. CAGGCGCTTGGGTTACTACCCGAAGAACTGAA 439 29 100.0 32 ............................. TGCTGACTACCGGCGCTCGCGTCTTTGAATGG 378 29 96.6 32 ............................T ACTGAACTGGAAACAGGGCGCAGAACCGCGCC 317 29 100.0 32 ............................. CTGATGGAACGACAATAAAGCATGTGGCAATT 256 29 100.0 32 ............................. CCGAGCTTGGGCTTGAAAGCGAGTCGTTTAGT 195 29 100.0 32 ............................. CACCTCATGAACCGCACCGCAGCGATTCACCG 134 29 100.0 32 ............................. GCTATAACGTCCGTGAAATTAATCAGGCGCAT 73 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCGCGCCAGCGGGGATAAACCGGTATTCACTTAGCCTGTAAAATTTCTGACTA # Right flank : GATTTTGACAAAATTGGATTTGATACAACTGTAGTGTTCCCCGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-944 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYU01000118.1 Salmonella enterica subsp. enterica serovar Vinnorrhady strain BCW_2812 NODE_118_length_13372_cov_5.35905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. CGGCCATACAGCGACGGGGCGATTTCCCCACC 63 29 100.0 32 ............................. GAGGAATTGCCAAAAGTTGCACGGCACATCAA 124 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 185 29 100.0 32 ............................. GCGCGGCATAACAGCACGGGCACGCCGCCAGG 246 29 100.0 32 ............................. TCAATCAGTATTGAATCACCGTACGACAGAAC 307 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 368 29 100.0 32 ............................. GCAACATCCTGCTCACCAGCTTTGACGGTCGT 429 29 96.6 32 ..............C.............. CCAGCGGTACAGCTATTCAGCTCACTCAGGAC 490 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 551 29 100.0 32 ............................. TAATTACGTTTTTTCAACGTCTCGATAATCGC 612 29 100.0 32 ............................. TCGTACCTCGGTTGGGGGGAGCAGCTGCTCCG 673 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 734 29 96.6 32 ...........A................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 795 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 856 29 96.6 32 ......G...................... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 917 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8-547 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYU01000350.1 Salmonella enterica subsp. enterica serovar Vinnorrhady strain BCW_2812 NODE_350_length_548_cov_1.99591, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 8 29 100.0 36 ............................. TCTTTTGTCACACAAATTGGATTTGATACAACTGTA 73 23 72.4 1 .....................TG------ T Deletion [90] 93 29 100.0 31 ............................. TAAACGCTGAGGGTGTCAGCGTGCCGTTTTG 154 29 100.0 32 ............................. GATCCCAAACTGGTCAGGCTGGCGATTATCAA 215 29 100.0 32 ............................. CCTGTTCCGGTATGCAATCAGATAAATTGCAT 276 29 100.0 32 ............................. GCCAGCGCTGGCGCGCTCGCGAAATGGGAACC 337 29 100.0 32 ............................. TTTAAAGGCGTGCAGCGTGTTTTAAAGGGGGT 398 29 100.0 32 ............................. TTGGCTGACAGGAGCTAATTATGGCGCAGTAT 459 29 100.0 32 ............................. TCTTTTGTCACACAAATTGATAGTTAAGATAA 520 28 96.6 0 ............................- | Deletion [548] ========== ====== ====== ====== ============================= ==================================== ================== 10 29 96.9 29 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCAGTATG # Right flank : G # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19-230 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYU01000381.1 Salmonella enterica subsp. enterica serovar Vinnorrhady strain BCW_2812 NODE_383_length_258_cov_3.8995, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 ............................. GTCGCCCATTTCGTTTCTTTAGACTGATCTTC 80 29 100.0 32 ............................. TTGCGTGGCACCATTATCCACAGCTATGTACT 141 29 100.0 32 ............................. CCATCCGTACTCGGCTGCTAAATACCGAAACT 202 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCCGATCTAGTTTTAGTG # Right flank : GCACGGCACTACACGCACGCCAGATCGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16571-15077 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYU01000093.1 Salmonella enterica subsp. enterica serovar Vinnorrhady strain BCW_2812 NODE_93_length_17295_cov_4.5452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16570 29 100.0 32 ............................. GCACGGCACTACACGCACGCCAGATTCCACAC 16509 29 100.0 32 ............................. ATAGCGGAGGAGTCGGAGGGGCTACATTAGAC 16448 29 100.0 32 ............................. GTAAGCGCTTCCATAGCGGCTCCTTAGTGATG 16387 29 100.0 32 ............................. ATTAGCAACGCGAAAAAAATATAGGGAATCGC 16326 29 100.0 32 ............................. GCAGACCAGTTGCAACCGCAGGATGGCCCAGC 16265 29 100.0 32 ............................. CGGTTACATCGTCAATCAGCACTGGCAACGGT 16204 29 100.0 32 ............................. CTACGCGGCGCTTTTTAAGCTTTGCTTCATGC 16143 29 100.0 32 ............................. GACTGTTTTAATCTGTCCGAAACCTTTCCCTG 16082 29 100.0 32 ............................. TTGTGTGGGTACAGCCAGCCAGCGCCAGCAGT 16021 29 100.0 32 ............................. AAGAGGCGTTAATCCGGGTATTCAGAGAATTG 15960 29 100.0 32 ............................. GCTTATAGGACACGGATTTTTATTGATTAGCC 15899 29 100.0 32 ............................. CCATGTAATCAGGCATATGGGCATTCGCGTAG 15838 29 100.0 32 ............................. GCAGTACCAAAGCGGAGAAATATCTGAGAATT 15777 29 100.0 32 ............................. GATACGCTCATCAAATCCAATCCGCATAGACG 15716 29 96.6 32 .............T............... ATCGCGGGATACGTAGAAAACTGTATTTAGAA 15655 29 100.0 32 ............................. TGCCCAAGACTAAACTTTTTAATATCGCAGCA 15594 29 100.0 32 ............................. CGCTGGATCGGGAAACGAATATCTGACGCACT 15533 29 100.0 32 ............................. TGGTTAAGGTGGTGAAGATGTGGCGTAAGCTC 15472 29 100.0 32 ............................. GAATTATACGCCGGGAAGAATTAAACCACTGA 15411 29 100.0 32 ............................. CCACACAAAAGCGCATCAGGAACGTTTCTAGG 15350 29 100.0 32 ............................. ACCGGATCAAAAACGCTGGTCGTGGGTGGCTG 15289 29 100.0 32 ............................. GTGGAAACGGATAACCGGCTGATCCCCGGAAC 15228 29 100.0 32 ............................. ATACTAACCCTATATTATCCGCAACACTGGAA 15167 29 100.0 32 ............................. GAGCGAGTTCGCTACTACCGTGAGCAAAGCCA 15106 29 100.0 0 ............................. | A [15079] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14626-14959 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYU01000104.1 Salmonella enterica subsp. enterica serovar Vinnorrhady strain BCW_2812 NODE_104_length_14998_cov_4.97758, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14626 29 100.0 32 ............................. CCCCAGAAAATCAAAAAACGATTTATTATTAC 14687 29 100.0 32 ............................. GAGTTCACGAATCCCTCCTCACCGAAGTAGAC 14748 29 100.0 32 ............................. ACTGATAAACTGGATTATAGAATACCGCTAAC 14809 29 100.0 32 ............................. TGGTGAACGGGTTCACGATACGGCTGAACCAC 14870 29 100.0 32 ............................. CCTGCGTTATCAGCCGCTGGTGAGCGCCGATC 14931 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : CGCAATTAACTCACACTATCGCGCTGATTTACGTGTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.10,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //