Array 1 657594-658620 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822017.1 Streptococcus thermophilus isolate STH_CIRM_336 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 657594 36 100.0 30 .................................... TGTATAAAGCCGATAATGCCGCTGTAATGC 657660 36 100.0 30 .................................... TTCCACCTCTTCCATTTCAACCGTGTAAAG 657726 36 100.0 30 .................................... TATTGGCGGAGGGTATCCCGAAGCTGTTAT 657792 36 100.0 31 .................................... TCATTAGAGGATAAGCATACTGCTTGATTGT 657859 36 100.0 30 .................................... AACCACATACATGGGGCAAGTTGGTAAGTA 657925 36 100.0 30 .................................... TGGTGTTGTGGATAGGTTTTCCAGTGTTTG 657991 36 100.0 30 .................................... TAAATTCAATGAAAGCACTACATGAGTACA 658057 36 100.0 30 .................................... TCGTGTTCTTGCGAGAATTCATTGTGCTTT 658123 36 100.0 30 .................................... TTCCTTCGTCCGTATAACTTTCCTTTATAT 658189 36 100.0 30 .................................... TCGTCAATATTGAGGCAAACAAAAAAGCCC 658255 36 100.0 30 .................................... TGGTGTTGAAGCTGGCATGGACTCGAACGG 658321 36 100.0 30 .................................... AAGTGTATCTTCAGAGGGGACATCATTGCG 658387 36 100.0 30 .................................... AAAGTATTTTACTAACTCTTTAACTTGATT 658453 36 100.0 30 .................................... TGAAATAAGTTGGAAGGAGCGCTTTGTTTA 658519 36 100.0 30 .................................... AACAATCTGCAAAGAATTATTAAAAGGAGC 658585 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTCCCGACGGGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGATAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTTCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTTTCATAAGCTGAGGAGGTGAAGTAAGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 890924-891822 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822017.1 Streptococcus thermophilus isolate STH_CIRM_336 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 890924 36 100.0 36 .................................... TATTTTACCTCATTTGCTTGGTAGTATGCTTTTTGT 890996 36 100.0 37 .................................... TGGATTACTTTGTGAGGTGTTAAAATGCCTGTCTCTG 891069 36 100.0 35 .................................... TGTTAGTGTGTTCAATAATTTTTTGTGTAAAATGT 891140 36 100.0 37 .................................... ACTTCTAATGTTTGCTTGTTTGACCAAATCCAATTAA 891213 36 100.0 40 .................................... TCTTTTAATTCTTCTAGGTTATCGCTGAATGGATAGAACA 891289 36 100.0 34 .................................... TCTGAAATTATCATAATTCAAATAAGTTGCTTCA 891359 36 100.0 34 .................................... AGGGTATTCTGATCTTATAACTTCGACTTCATCA 891429 36 97.2 33 ...................T................ TAAATGCTCTTGTGTACTGTTTCTTTCTTTGTC 891498 36 100.0 37 .................................... ACATTTAATGTTTGGTGTGTCTGGTTTGCTGCAAACA 891571 36 100.0 39 .................................... CGGTTAGGGTTGTATGTTATTTGAATCTGTTTCTAGTTT 891646 36 100.0 35 .................................... CGTTTTTTCATGGCATCCATAAACTTCTTTTGGTC 891717 36 100.0 34 .................................... GCGTTACCGTAGACCTCTGCGTTACCACTTACCT 891787 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ======================================== ================== 13 36 98.5 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGTCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAGTATTGACATCGCTTCCAGAAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTTTTGGGTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGGTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCTTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1378591-1377497 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822017.1 Streptococcus thermophilus isolate STH_CIRM_336 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1378590 36 100.0 30 .................................... AAAACCGCTGAATAGTGAGGTATAGCATGA 1378524 36 100.0 30 .................................... TCAAAGAATGGACCATCTTAATGATAATAT 1378458 36 100.0 30 .................................... TACTACTTATGACGAAATTGTAGCAACTGT 1378392 36 100.0 30 .................................... TCTGAGTTAAACTGAACCCTGCTCTACCAT 1378326 36 100.0 30 .................................... CGTTGGTCGTATTATCGTCAATGCCAAGAC 1378260 36 100.0 30 .................................... TCACCATTGGTGTTATTGTCTAATCTAAAT 1378194 36 100.0 30 .................................... GGTGGTGCTACACATACACTACGCTACGCT 1378128 36 100.0 30 .................................... TTTCATCGAAAACTACAAGGACATTAATCT 1378062 36 100.0 30 .................................... TAGAGGTAATGACGGTTTACCAGGTAAAGA 1377996 36 100.0 30 .................................... TTGGTATCAAGTCGGTGGAAACGCAAGTCT 1377930 36 97.2 30 ........................C........... TATCCCAGAGAATGGAAGAACAATTATAGA 1377864 36 100.0 30 .................................... CAAGTGTAAGCCCGTTGATGGCTCTTAGTA 1377798 36 97.2 30 ....................C............... GCTTGAAATAGAAAAACTCAAATCTCAAAT 1377732 36 97.2 30 ....................C............... TTTTCAAGCTGGTCTATGTATACCATTTGC 1377666 36 94.4 32 ....................C..............A ATTTCCTAAGTAACTATACTCACAAGAAAACA 1377598 36 97.2 30 ....................C............... TTGATGTTGTCTTTTTTGGTTATGACGCTA 1377532 36 97.2 0 ....................C............... | ========== ====== ====== ====== ==================================== ================================ ================== 17 36 98.8 30 GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGACTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAGTTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGCTTTTTAAGGTATAATAAATATAAAAGTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCATAATTTTCGGTTGACATCTCTTAGAACTCATCTTTTCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATATGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTTTTAATGAGAAAGAGCTTGTGGTTTTGATTCAGGTAGAACTTGATTGACAGCAAAAAACTCTTGGAAGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAAATTTGTAACTTTGAGAAGGGCTCTCCTAAGAATACTACAGCAGCTAGAATTGAGATAATCGTTGATATACCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //