Array 1 9812-14599 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKGN01000061.1 Lacticaseibacillus paracasei strain FAM8140 FAM8140_scaffold_0061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 9812 28 100.0 33 ............................ CAAGATTGGGCCCATACCGTTAATGACTTTCAG 9873 28 100.0 33 ............................ CAAATGGTGTTTCTTTTGAGAAGTTCAATCCAG 9934 28 100.0 33 ............................ CACGTCCCGCTTCGTCTCATTGTTCATCGTCAG 9995 28 100.0 33 ............................ CGCCTCGGCTTGATTGAGCACCTGAGCATACCA 10056 28 100.0 33 ............................ CCCAACTAACAGAGACTTTTTCATAGTGAATTC 10117 28 100.0 33 ............................ CGAAGTTACGCCGCCACAAACGCCGAAGCTTGT 10178 28 100.0 33 ............................ TCAGTCCTTCGTCCAGAATGTCCTGAATCACGC 10239 28 100.0 33 ............................ TGACCATTATTTCATCTGGCCCCCACATTACTC 10300 28 100.0 33 ............................ TACCAACCACTTTTAGAATGCTGACAGCCCCCA 10361 28 100.0 33 ............................ TACCTGCGATATAAGGCGCGTATGCCATGAGGT 10422 28 100.0 33 ............................ CTGTGTTTCCCATAGCACCCAACCCCCAATCCC 10483 28 100.0 33 ............................ CGTCATTGTGAGAATGCTGGCGTTCCCATTATA 10544 28 100.0 33 ............................ CTTTAAAAACTAAGGAGAAAAATCATGAATAAA 10605 28 100.0 33 ............................ CGTCATGCAAACAACAAGGGGGACAATATGAAG 10666 28 100.0 33 ............................ CAACACTTTTGCTCCGAAGGTTGATTCGATCGG 10727 28 100.0 33 ............................ TGGTGTTATCAATAAATTGATTGCCAACATAGT 10788 28 100.0 33 ............................ TGACAAGGCCAATACGGCTTAACAAAACATCAA 10849 28 100.0 33 ............................ CTATACTTTTACTGGTGCAGGCAAAACTTATCC 10910 28 100.0 33 ............................ TGGGCGAACCGTTGCACAGGACACGCCACAGCA 10971 28 100.0 33 ............................ TGGATTCGTCAAACTCTTAGTTTTGAGAATGAC 11032 28 100.0 33 ............................ CCATAGAAAGAGGCACAACGACACTCCCACCAG 11093 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 11154 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 11215 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 11276 28 100.0 33 ............................ TTGACCAACCACGTTGATCCGAAAACCCAGGGA 11337 28 100.0 33 ............................ CTGGTTCAGATGGATAGGTCCCAGCATTAGGCA 11398 28 100.0 33 ............................ CAAGCTAACCTTTCGCCTAGATCGTCTTGATTT 11459 28 100.0 34 ............................ CAAAAGTCTGAACGCGTTTATCATCTCGATTTCA 11521 28 100.0 33 ............................ CCATAGCGGCGTCAACATTAGTACGCTCAATCT 11582 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 11643 28 100.0 33 ............................ TTTCATGGTGCCCTCCTTATTGCTGTGGAGCAA 11704 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 11765 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 11826 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 11887 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 11948 28 100.0 33 ............................ CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 12009 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 12070 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 12131 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 12192 28 100.0 33 ............................ AGCACAGACGCCGAAGGGAAGCATCGTTGCTTT 12253 28 100.0 33 ............................ CAAGCCATGAAAAAAGCCGCTGGCCCGCATGCC 12314 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTTA 12375 28 100.0 34 ............................ CCTCTGCCCAGTCACCAATCGTGTATCCAAAAAA 12437 28 100.0 33 ............................ TGATCTTCGCAACCGTGAAGGGATTTCAATCAG 12498 28 100.0 33 ............................ CATTAGACGCCGGAACAGGCTGTGAATTTGTTG 12559 28 100.0 33 ............................ CGCGTTGGGATTGATCCATGGGAGCTTATTCGG 12620 28 100.0 33 ............................ TACGCTTGCTGGTATGGCTCACCAGCAGGAGTA 12681 28 100.0 33 ............................ TAATGCTAGTGTGGTTCTCGTAAAGACCATCTG 12742 28 100.0 33 ............................ TGGATTGAGCTGTACAAATCTGGTAAGCATTCT 12803 28 100.0 33 ............................ CAAGATAACGTTAATCGACTACTGGGACAAATG 12864 28 100.0 33 ............................ TGCCGATTTGCAAACGATCGAGCGGTTCTCCAA 12925 28 100.0 33 ............................ CCGTGGTTCCCAAGCTTTTTTGTTTGCCATTTT 12986 28 100.0 33 ............................ TCAAAGCCCACATTAACAAGGTTGCCATGACGA 13047 28 100.0 33 ............................ CAACAACCAACCTTGCCAAACTTGAAAAGCAGG 13108 28 100.0 33 ............................ TTGCGCCCATGTCTTTGCAAGTTTTGTCATAGC 13169 28 100.0 33 ............................ TGGTTGTTGACCAGCCTGTGCTTGGCTTAGTGA 13230 28 100.0 33 ............................ TAAGATTGTGACGTCCGGCAGTATTTATGATCT 13291 28 100.0 33 ............................ CGGCAACGGCACCTCTAACATCTGTATTACCAA 13352 28 100.0 33 ............................ TACCAGCATCCTCAGCAGTGAATGTGTCCTCAC 13413 28 100.0 33 ............................ CAAAAACCCCACAATGTCATCGTTTAACCAGTC 13474 28 100.0 33 ............................ CGGGTAGTTGAACTGATTGACCGCCAGCAGTGA 13535 28 100.0 33 ............................ CATCATCGGCAAGCTTGCTGACAAGAACGAAGA 13596 28 100.0 33 ............................ TGCCTTTTTACGGTTCAATGCGGCCATAGAGCG 13657 28 100.0 33 ............................ CGGTCCCGCTAAGTTTACGTTCGACAAATGGCG 13718 28 100.0 33 ............................ CATCTCTTCGAACCCCAAATACAGCGTCATTAC 13779 28 100.0 33 ............................ TGACAAATAGATATTTGCAACGCTTGGACAAAC 13840 28 100.0 33 ............................ CCATCGCTTGCGCCAATCGTGATTTAATCGTCG 13901 28 96.4 33 .................C.......... TTTATTAGAACTAGCTGAAGATGGAACAAATGA 13962 28 100.0 33 ............................ TCACCAATGGTACGTTCTGCTTCATTCAATCCA 14023 28 100.0 33 ............................ AACTCGGGGGAAATATAATCGTCACTGGCGTCA 14084 28 100.0 33 ............................ CAATCAATTCGCCAACCGTTAATTCGCCATTCA 14145 28 100.0 33 ............................ CGAGCTGCAGGACTACTCACGATGGACGAATTA 14206 28 100.0 33 ............................ TATGATTGTCGAATAGGAACCGTTACCGTCAAT 14267 28 100.0 33 ............................ TGGTTGATCCGGCCGCTTATGTATCCGCACGGA 14328 28 100.0 33 ............................ TGCGATTCACGAAGATTTTTATTTTGAATAGCA 14389 28 100.0 33 ............................ CGTCTTTGCCGTCTCTTCAGGGGCAGATTACGG 14450 28 100.0 33 ............................ CAAGCGAGAGAGGGCGAAACAGTGGCAAGAACG 14511 28 100.0 33 ............................ CTAGGGGGTTAGATAATGCGAGCAATAAGCGTA 14572 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 79 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : TTTATGAGTATCAGCGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCATGAATCACTTTAAGGGACGCCACTTTCAAAAGGACATCATCTTAGTAGCCGTTGGCTACTATTTCAGATTCAGTCTCAGCTATCGTGACATCGTTGAATTGCTTCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 35385-32938 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKGN01000040.1 Lacticaseibacillus paracasei strain FAM8140 FAM8140_scaffold_0040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35384 36 100.0 30 .................................... AATCAAAAGTTGTATAGGAATGACGGTCAG 35318 36 100.0 30 .................................... AAACACTTATGGCAACCCTGTAGAATATGT 35252 36 100.0 30 .................................... TCTTGTCTTTGCGATCAGCTTGAACACTCA 35186 36 100.0 30 .................................... AAAAACTACCATTTTTAATAAGGTAGTCTT 35120 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGTCGGCTGT 35054 36 100.0 30 .................................... CATCGCATTGGCTGAACAAATGGCTGGAAT 34988 36 100.0 30 .................................... TCCAGCCCGTGAAGTCGCCCGATAAATTCT 34922 36 100.0 30 .................................... CCTAGTGGGTTTTCTAACTTGAATGCCTAG 34856 36 100.0 30 .................................... TGCAGAATTTAACGCCTACGTTAAATCACT 34790 36 100.0 30 .................................... GGCCAAGGGGGAAATGAAAGCCAGCATTAT 34724 36 100.0 30 .................................... CACCTTTGTAACGCTCGCCGCTAGGCGTCC 34658 36 100.0 30 .................................... TGCAAACCGGCCGTGGCCGGTGAAGCCATT 34592 36 100.0 30 .................................... GCGAGGTCAACGACAGCCTCCGCAGCAGTT 34526 36 100.0 30 .................................... CATTAGGCGTAAAATGGATTGCTGAAACGG 34460 36 100.0 30 .................................... AAATCATCAAGCGAGGGGTTATTTATATGC 34394 36 100.0 30 .................................... CACAAAGGTTGCAACTGCAAAACGTATCAC 34328 36 100.0 30 .................................... GGGTCACACTTACACCGAGTTTCATGATGT 34262 36 100.0 30 .................................... AACCACTCGCGTTTTTTCGCCGTTTCCATA 34196 36 100.0 30 .................................... CCTTGCAAGTCTTTTCAGATGGCGCCTATG 34130 36 100.0 30 .................................... CAACAAAGTTGTATGGTGAAGGCGTTCACA 34064 36 100.0 30 .................................... ATGGTTGCATTAAACTGGAGGTGTTTCACG 33998 36 100.0 30 .................................... AATTATGGAAACTAATGTGAAGCATACAAC 33932 36 100.0 30 .................................... AGTCGGCAGCGGCAGCAAAGTCATTGATTG 33866 36 100.0 30 .................................... TTTTTCCGGCGCGGCGCGTTGCCTTATGGC 33800 36 100.0 30 .................................... TCTTCTCATAGGCACTCGCGATAATTGTGT 33734 36 100.0 30 .................................... GGCAGCAAACCCGGTACCATGATCCAGTGC 33668 36 100.0 30 .................................... GGCAGCAAACCCGGTACCATGATCCAGTGC 33602 36 100.0 30 .................................... ATCTATATGGACTGAACGGAGCACCTTTCA 33536 36 100.0 30 .................................... TGGCGAAGAGCAATATCGTGCATTTCAGCG 33470 36 100.0 30 .................................... CATGGTTGACGTAAACAAGCAGCAAGCGGC 33404 36 97.2 30 ...................C................ TCTTCTCATAGGCACTCGCGATAATTGTGT 33338 36 100.0 30 .................................... GCTGAAGTATCTTGGCAGGAGGCATGGCTA 33272 36 100.0 30 .................................... AGGGGATTTAATTGGGCATGTGGTCACTCG 33206 36 97.2 30 ..........................A......... ATTTGAGTAACCAGACTCAGATGTGCTTAT 33140 36 100.0 30 .................................... CCAAGGGCAGGTTTTCAACTGCCTTCTGGA 33074 36 97.2 0 ...................C................ - Deletion [33039] 33038 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 32973 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 38 36 98.8 29 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGAAAGCTCGATCAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGTCAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGGTCTCATTGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTTGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : AAGCAGCAGTGATACTAAATTGAAGCTAAACTTGTCAAAAAGTGCCTCATCTTTTTGACAAAATAAGGTGTTTTACTATTTATTGTGTGAATCAAGCCCCGATATTTACAAAGCCGAATCTTTCAGCGGCCAACCTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCGACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAACGCGAAGGTCAAGATTAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //