Array 1 19042-18588 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOPG01000026.1 Streptomyces sp. H23 NODE_26_length_102600_cov_30.317539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19041 29 100.0 32 ............................. GACTTCTCGACCGGCGCCATCGTGAACTTGGC 18980 29 100.0 32 ............................. GTGAACTCTCGCTCCAGGGATGGCAGACCGGC 18919 28 93.1 31 ...........C....-............ ATGAGGCCCAGCAGCCGCTGCGCCCACGCCT 18859 29 89.7 32 ..................A...CT..... AGAAGTGGGTAGACGTCAGGCTTACGAGTAGA 18798 28 86.2 33 ...T.G...........-.A......... GTCTCCGCGGAGGGCCAGCCTTCCGAAGAAGAA 18737 29 96.6 32 .............T............... GCCGGACAAGCCGCCGCCTCCGGAGTGTCCGA 18676 29 100.0 31 ............................. GACCTTGGGCTGACCGGGTTGGGAATGGGCT 18616 29 89.7 0 ...A.........G...A........... | ========== ====== ====== ====== ============================= ================================= ================== 8 29 94.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACATGCCACCACGCAGGAAGTGCTCGCCTGCTGGTTCGGTGTCGACCGCTCCACCGTCACCCGTGCCATCGGGGAGGTGCGGCCCTTGCTCGCCGAGCGAGGGTGCACCGTCAGCCAGGGTGTGCGGCTGCGGACGCTGGCCGAGGTCATCGACCACCTCGGTGCCGACGGGAAGACCGGGATCATCGACAGCACCGAGATTCGGGTCCGCCGCCCGGCCGCCGGACGCAAGGACCGCGACAGGTTCATCTCTGGCAAGAACAAGCAGAACGCGGTCAAGACCATGGTCGTCCCTTCACCGCTGCGCACGCGGTGGACACGATGAGCTGGCCAGACACGGACTGGCCGGTCGCTCACGCGGCGGCGATCGCCTGGCACGCGATCAAGGCAGGCGAGCCGCTCACCGTCCTCTCGTTCCGGCCCGAGCTGTACATGGCTACCGGCATCACGCCACTGAACCCCGCCTGACCGGCGTCGGCCCTGGCGCGGTCGCCCCGGAC # Right flank : CAAAAACGGGGGCACGGCTCCTGTTTCTCAACTGGCAGCCTGGCGATTCAGGGCAGCTGGCGATGCCCGGCAGGTCAGGGGCAGGGCGCCGGGCCGTCCGGGCAGGCGGTGAGAAGTGCCCGGGCGCGGTTTCGGAGGGTTTCGTCCTGGTGGATGACGCGGTCTTCGACTCCCGAGCGGACCACCCGGGCGTCGCCGTCGGCGAGAGCGGCAAGTCGGCGCGCGTGGTCGTTGGTCAATGCGTCGGGGCCGAGTGCTTCCAGGGCGTCGCAGGCGCCTGCCGGATCGGCGTCCGATTCGGCCGACTGCAAGGCGGCTTCGGCGAGCGTGGTGCGGTCCAGCGAGGCAGGTTCGGCCACGGCCGTGAGGGCCAGCACCGCGGCCGGTGCCTGTACCGGATCGTTCAGGGCGGCTTCCAGGCGGGCGGCGAGCGGCCGTCCCGCGGGGCCGAGGAGGGCCGTCAGCAACCGACCGAACTGGTCACTCCGCAGCCGGGTGAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 21680-19658 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOPG01000035.1 Streptomyces sp. H23 NODE_35_length_45608_cov_31.380400, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 21679 33 75.8 25 CC.......A.......A....G......TT.T CAGCCCGCTTGACCCGGTGGCCGCC 21619 33 93.9 27 .............G..T................ CGAGTACGAGAGTGACCGGATCGGCGA T,CC [21588,21604] 21556 33 81.8 28 A.......G................C...GTT. GCCAGTGACAGGGCGTCATGCGCGACCA 21495 33 87.9 28 ..................C.....G....GA.. TGGCGCCGCTCAAGGACGAGCTGTCCGA 21434 33 78.8 28 CC.....T....AG...............T..T CCAGCCAGTGCAGGACGTAGGCCCCGTC 21373 32 72.7 27 ...A.....T..........T.-..CTA.GG.. CTTCTGCACGTCGGTCGGGATCGCCAA 21314 33 72.7 28 .C.......AGT......A.....C...AG..A CTTCTTCGAGTTGCCGGGTGTGGAGGAC 21253 33 81.8 28 ...G...........A........C....AA.G TGTGGCGGCTGAACGTCGTCGAGACGAC 21192 33 81.8 28 ..T..............A.A.........G.AT CCCCGCCCCGGCAGACCTACCCGTCCGG 21131 33 90.9 28 ...T.........................G.C. TCTAGGAGACCAGCGATGGCACTCGTCC 21070 33 90.9 28 ............................CA..T CGTGGCCCATGTTCGCGGCGTCGTTGGA 21009 33 90.9 28 .............G...............GA.. ACCAGGAGCCGATGATCGACGTGAGCCA 20948 33 87.9 26 ...TC.................C........A. CACCACACCCCCCTGGAGGGGGTTGG T [20918] 20888 33 84.8 28 .C.....................A.....AA.T CGGAGACACTGCGCAGCACGATGCTGCG 20827 33 90.9 28 ........T....................A..A GCATGTAGGCGACGCGGGCGGTGCCCTT 20766 33 90.9 28 ..............................TCG TCAAGGAGGCGAGCGCCTACGGCGCCAC 20705 33 81.8 28 ...T.....................G...ATCA GACAGCAAGGTGCCCGTGACCGACGCTG 20644 33 78.8 28 C.....T............A....C....TT.T GAATCTCGTCGACGAAGAGGTAGTCGAT 20583 33 75.8 28 ...G..TG.......T......C.....ATA.. CCGCCTCCGACAGGGTACGGACACGAGC 20522 33 72.7 28 ......A..T......T...A....C..AATC. TGGTGGACACCAGCGACCCGGACAACGA 20461 33 87.9 28 .........................G...TG.A CCGTCTTGACCGTTCCGGTGCTCTTCCT 20400 33 87.9 28 ...T.........................TA.G CGGGCATCACGTGGATGGTGTCGTCGCC 20339 33 84.8 28 ...T...T..........A............CA AGGGCGTCGTCACCGCGGTGTCCGCCGT 20278 33 87.9 28 ...T.................A..C....G... CCTGGCTGATGATGGCCCGCGTGGGCGG 20217 33 93.9 27 ............C...................T GAACCAGGCCGCGTTGGCCACGTCGGT T [20188] 20156 33 90.9 28 .............................AT.T CGGGGGTGCGGGTGGCGTGCATCGCCTT 20095 33 90.9 25 ...T..........T..............G... CCGCATCCGTCGAGATGCTCGCATG 20037 33 78.8 27 ...T...T..........A....T.....GA.G GCCGCCAGGCCCGACGACTGCGGCGCA 19977 33 90.9 28 ........................C....GT.. CGCCCACGCGACGCAGGGCGGTGTTCTC 19916 33 100.0 28 ................................. CGGACAACCCGTCACCCTTGGCGCCTTC 19855 33 84.8 21 .......................TCC.A...A. CTCCTGACCACTTGCAAAGTC GAAAG [19825] Deletion [19802] 19796 33 81.8 12 .............G.C.T...A.......A..A CCGGCCCTGGCG Deletion [19752] 19751 33 87.9 28 .............................TTCT GCCGGTCGACGTTCTCGGAGACGACTTC 19690 33 90.9 0 .............................G.TG | ========== ====== ====== ====== ================================= ============================ ================== 34 33 85.4 27 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGC # Left flank : GCTTCACCTCGTTGAAGGCCAGGCGGATAATTCCCTCAACCACCGCCACACCAACGGGTTTCCGCCGTAGAGTACATACCGCTGCACGCCTCCCTGGGAGGTGCGCGGAACCTCATTGACTCCCCGAAGCGACGGCAACGCCGAGCAGAACGCACGACCCTCTCGAGGGATGTGGCGCAACCTCGGCCCAGTCTGCGCTCTGGAGATGCAATGTCCCGGTTCCCGCACAAGTTCGTCCTGCGCCGCGAGGTACTCCTCGAGACCTCACGCGTAGTGATCACCGCGGTAATCCGCGCCCTGATCACCGAACTCGTCAGCTGGCTCATCTGAGCCAACGGTGACGGACCCCAAAGGGGTCCGTCACCCCTCATTCGCAGACACCCCCCCCCCACTGGCTGAACACGTCCCCTCGCTACAGAAACACACCACAGGACGAGATGCCCGGCTACCAGCGGAAACCGCCGACACCGCGAACAGAGAAGCCCCCGCCACCGCAAGAC # Right flank : CGCCGCACGCACCGCGGTGCTCGCGTCGGTCCTCCCGCGAGTTCGGCGGTAGCGGCGCGGGCCAGGGCCGGCAGGCGCCGGTCGTAGGCGGCGGCCCAGCGGGGCAGGTCGTCGCGGTGCCGCTGGAACAGGGCGGTCACCTCGGTGATCGGAAGCGGGCCAGTGGGGTCGGCGCGGCGGGGCAGTTCGGCGAGCAGGGCGAGGGCTGCCTGCCGCTCGGTGCGGCGGCCCTGAGGGAAGTCGATGCCGCTGCCCAGGCCGGTCGGATCGGTGGTCTGCCACCAGTCGCGGCGGACGGTGGCGGCAAGCCCGAGGCAGGCCACGACGCTCAGGGCCCGTTCACGGCCGGTGAGCGTGTGGAGGTAGGCGGTGGTCTCCGCGGCGTCGTCGTGGGGGTCGGTGGCGGGGTCGTCGACGAGTCGGCGTAGCGCCTTCAGCCGCCGCTCGTCCCGGGTCGGGGCTCCCGCTGGTTCGAGGGCGGCGGTGTGGTCCAGCAGTGA # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.27, 5:-1.5, 6:0.25, 7:-0.10, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [21-46] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 30622-31256 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOPG01000035.1 Streptomyces sp. H23 NODE_35_length_45608_cov_31.380400, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30622 28 75.9 32 .C...GG.........-A....C..G... CAGGTCAAGTCAACTTTCCAGCAGCGGAAGTG 30682 29 96.6 32 ..........T.................. GTCATCCGCCCCCACCGCTGCCCCGAATGCCG 30743 29 100.0 32 ............................. GCCGCATGAACGCAGCAGCCATCGTCGTCACG 30804 29 100.0 32 ............................. GCCAGCGTCACCGTGACCAGCCGCCGCGAGTA 30865 29 100.0 32 ............................. CTCCGCGCCGTACAGGCCGCGGGCGCCAATGC 30926 29 100.0 32 ............................. CACTACCCGGCCCCGGCGAAGGAGGTGTGCGG 30987 27 93.1 31 ....................--....... CTGTACGAGCAGATCGCCGACGGGGGTCCAT 31045 29 96.6 32 A............................ CGCGGTATCGCCGACGACGGCACCGGCAACGT 31106 29 100.0 32 ............................. ATGATCGACGCACTGTTCGGGTACGCCAAGGA 31167 29 100.0 32 ............................. CGATCGGCAACGGTGATGCGGAGGCCGCCGAG 31228 29 96.6 0 .................C........... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.3 32 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : ACTTCGCCACGCTCCTGGTCCAAGCCGCCACCCTCGCCCCGGCACGCCTGCCCGACGACTACGGCCACACCGACGTCAAAGACCTCACCCCAGTGTTCAACGCCCTCCAAAAGGGCCTCGCCGTCCGCTACCGCATCGTTGTCAACCCCGTCAAAACCGAACGCCTGCCACTGGAGAACAAGGGCCAGCGCGGCAAACGCATCGCACTCACCGGACCGGACGCCGACCAGTGGTGGGCACACCGCGCCCACGAAGCCGGCCTGCACCTGACCACAGCACTGCCCACCCCGGTCGCAGCCATCCATGGCCGCGGCAACAACGCCAGCGCCGCGCGACATCACCTCGTGCGCTACGACGGCACCGCCACCATCACCGACCCCGATGCCCTCACCGAGGCTGTACTGGTCGGCATCGGACGGGCCAAGTCTTACGGCGCCGGCCTGCTCAGCCTTGCCCGCGCAGCCGCATGAACCCACCTTCCGACCGCGGCCACGCCGCAA # Right flank : GGTGAACCGGGCCCTTTTTGGTGTTTTCCTCGGGTCCTCCGTGGGGGAAGCTAAGTTGTTGGCCTCCTCGAATCGGTTGTCGTCGGCGGGGCGCTGGGCAGCATCCTCGCGGCATACGTCGGCGTGGTGTTCCCCGGCCTCCTCCCGCCTAGAACAAGCTCTCCACCACCTGCGGTTGCCGGCAGAATCACCCGGCGACAGCCCCAATAACGCTCGGAGGGGGGTTTGTTGGTGTGCCGGGTCGTTGATGGCCTGGGGTGTTGTGGGTTCGTTGAGAAGTCGAGTGGGCGGTTCGGCTGGGGTGGGCGGGGTGTGTGAGCTGGGGTTATGTGTTGTGTGTGGAGTGTGGCCCGGGTGGGTTGTAGGTAGTTCTAGCGTGTAAAGACTCGGTTGGTGTTTGTGCTGGTCAGGGCTGTTTTGCCTGGTTGGTGGGCGGGGGGTTAGCGGTTGCGGGTGGGGCGGTTGTGTTGTTCGGCGAGGTGGTCGAGCTGTACGGCGTC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [8-8] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //