Array 1 197377-199299 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLD01000005.1 Salmonella bongori serovar 48:a:- strain 1308-83 NODE_5_length_383912_cov_1.6896, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 197377 29 100.0 32 ............................. GGTCAGGACAGGGAAATTGTTTCCGCTCGCGT 197438 29 100.0 32 ............................. CACACAAGCGGTAGTGGGTTCTAATTTAACTC 197499 29 96.6 32 ............................T AACTGCCATTGCCTACCAATATAAATATGCTC 197560 29 100.0 32 ............................. GATTTAGCCAGATATGTAGCAAATCTTCGGGA 197621 29 100.0 32 ............................. CATCATTAATAAATTGACGCGTAGCAGTAAAT 197682 29 100.0 32 ............................. GTTTCGCTTATAAGTTGCCGATGAATGATTTA 197743 29 100.0 32 ............................. ATCTCAATACCCGGCCCAACGCTATCACCGGT 197804 29 100.0 32 ............................. GCGTTAAGGATGATTATACGAATAATATTCAT 197865 29 100.0 33 ............................. TGTGGGTGCCGCTGGTGCGACCCTTGCCCCCGG 197927 29 100.0 32 ............................. ATAACAGGCGCAAGAATGCCGAAATTTAATAT 197988 29 96.6 32 ............................A AGATTTGGAGGCAATGAAATTCATGCAGGAGC 198049 29 100.0 32 ............................. CTAGTATATTGTACGCTGGATAATGTTTCCCA 198110 29 100.0 32 ............................. TCTCACGTTAACGCTTATTTCGCAAAAGAAGC 198171 29 100.0 32 ............................. TAACAATCCCCTGCAATTCATCAGAGAGTCTC 198232 29 100.0 32 ............................. TTGAAGTTCATTCGCGAGGCTGCGTAACAACC 198293 29 100.0 32 ............................. CGATAAACAGACCGTAGCGGGATTTACTGCGC 198354 29 100.0 33 ............................. TACACTACTTTTTGTGTGGTCGTACCAGTGTTC 198416 29 96.6 32 ...................A......... CAGCAAGGCGGATTTAATCAGCAGCAAGGCGG 198477 29 96.6 32 ............................T CCGTTAACCCTCTCCTCAGCAAAGGATGCGTC 198538 29 100.0 32 ............................. TCTCACGTTAACGCTTATTTCGCAAAAGAAGC 198599 29 100.0 32 ............................. CCGCTGCTCATCTGATAGAGCCAGCATTCTTG 198660 29 96.6 32 .............C............... TTTGGCTTCATACAGCAACCTCCTGTTCGTCG 198721 29 96.6 32 .............C............... AATCTGGTTAACCCCACTTACCCGAAAAATGC 198782 29 96.6 32 .............C............... GTCCTGATTCGTCATATTCACTACGCCGCCCG 198843 29 93.1 32 .............C..............A AGTAAGCTATATTGATATGTTCCCATTTGGTA 198904 29 96.6 32 .............C............... CTCATCCAGTCAGAACTACAAAAAATATCCCA 198965 29 96.6 32 .............C............... ATAAACTTTCCGTTACATCAAATGCCGAGAAA 199026 29 93.1 32 ...........T.C............... CGCCTGTATAGGTGGCGCGGAATGATGGACGA 199087 29 96.6 32 .............C............... CAGATAAAAAAACCGATAAAAACACGGAGTGG 199148 29 93.1 32 ............TC............... CGGAACTGGTTAACGAGGGCGAACACGCGCAA 199209 29 89.7 32 .A...........C.....A......... TGGTTGGCCTTCAGTATGCCATCAAGATAAAA 199270 29 82.8 0 .............C.......C.TT..T. | T [199295] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGTGCCGGAATCTCTGGGTGACAGCGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTGTTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACATTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGCCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //