Array 1 164103-160353 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBME01000001.1 Corynebacterium propinquum strain HSID18036 NODE_1_length_595695_cov_165.651620, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164102 29 100.0 32 ............................. AAGGTCTACCAAGATCGCCCCATTGGCTACCT 164041 29 100.0 32 ............................. AAAATCCACTTCACAGAGCTAACCCCCTACCT 163980 29 100.0 32 ............................. CCTACGTAAAGAGTCGCCTTTAGTAATGGCGC 163919 29 100.0 32 ............................. CGGGCACACCAGAGTATGACGAAGCCTTGGAC 163858 29 100.0 32 ............................. ACCTGCCGCAAGGAACACTGCTAATGACAACG 163797 29 100.0 32 ............................. CGGCTGGCCCGCATCATTCGAGTGCTCAATCG 163736 29 100.0 32 ............................. TACAGACACCGTGATTCACGTTGCTAACGCCT 163675 29 100.0 32 ............................. CTTATTCGCGATGTGCTCGTTTTCTTCCGGCT 163614 29 100.0 32 ............................. GGTACAGCTCGGCCCCATTGCGGGCATACGAG 163553 29 100.0 32 ............................. ATTGCGCTGCTTGAATGGGGCATACAGCCCGG 163492 29 100.0 32 ............................. GGTATTCCGGTTATCGAAGTAATCGACTTACG 163431 29 100.0 32 ............................. GCGCTGGAAGCAGCGAGGAAACGCCAGTTGGC 163370 29 100.0 32 ............................. TTTTGGGCCCATGACGGGTAGCTTGCGTGTGG 163309 29 100.0 32 ............................. AGCGCGGTGATATAGCCACGCTCCGAGAATCC 163248 29 100.0 32 ............................. TGGATTCGTAGCTTGGTCTTACACCAATGCAG 163187 29 100.0 32 ............................. CATGAAAATGACCGTGCATTACACCGATGGCA 163126 29 100.0 32 ............................. CCGATTGAGCGTTATGCCGTCGGGATTAAACA 163065 29 100.0 32 ............................. TTTGAATAACTCCGGGTTTTTACCCACTTCCA 163004 29 100.0 32 ............................. GGGTAAATCTTTCGCTCGTACCAGCCCCAGTG 162943 29 100.0 32 ............................. CTAATCTCGCCTAATTCAATGTTCGGGCTTTT 162882 29 96.6 32 ............................T AACCCGGAATACTTGAAGCTGCTGGGCGTAGA 162821 29 100.0 32 ............................. CCCGGCTATGCCGCTTATCCCACGCGCCAAAT 162760 29 100.0 32 ............................. CGGTGGAGCAGTTAATGAGGTCACTGGAGCTA 162699 29 100.0 32 ............................. CTGTTCTCCGGTTACACAGTGTGCAGCGGTGG 162638 29 100.0 32 ............................. TCGCTTAAATGGGCGGCGGCAACGAACCTGGT 162577 29 100.0 32 ............................. CCCCGCCTCAGCGATTTCAGGTCGCGTTGACG 162516 29 100.0 32 ............................. ATGCGTAGCCGCGTGTGCCATTGTCGACGGCA 162455 29 100.0 32 ............................. CACACGGGTAGAGCCTGACGTGATTCCTAGCC 162394 29 100.0 32 ............................. CTCAGCCCATCTCACCGCAGTTGCGCTAGTAG 162333 29 100.0 32 ............................. GCGCCATGAGGGGCTAGACCACGTACACGCAC 162272 29 100.0 32 ............................. CTGCGGAATAGTTTTAGCCCGCATCGCCCGCC 162211 29 100.0 32 ............................. TACGCTTATCGGAATTTCTTTCGCTACGGGCG 162150 29 96.6 32 ............................T TGAGTGATATCGACGTTTGTGCTCACCACAAA 162089 29 100.0 32 ............................. TCCGGTCGATAAAGATGCCACGGATACCGATT 162028 29 100.0 32 ............................. GAAACAGCCAGGGGCTGTGACATTGCGGGCAT 161967 29 100.0 32 ............................. GTTGTTTTAGGCACCAAACCAGTCTGCTAAAA 161906 29 100.0 32 ............................. AAGAAACTCATCGCCATTGCGTTCCCACATCA 161845 29 100.0 32 ............................. TTCGAGCCGGTTGGCGTGCGAGTTCCAGGCGA 161784 29 100.0 32 ............................. AAGCTATTACCGGAAATTGCAGCCCAGCTCGA 161723 29 100.0 32 ............................. GGTTGCCGCAATCGCCCTGCTACCCATCTTGC 161662 29 100.0 32 ............................. GCATACTTCAAAGCGAAAAACAGTAATGACGC 161601 29 100.0 32 ............................. AAGCTATTACCGGAAATTGCAGCCCAGCTCGA 161540 29 100.0 32 ............................. ATGGCGCGCGGAATACCGCCGATAAGACCGCC 161479 29 100.0 32 ............................. CAAGCAATTAGGCTTCACCGCGCTGCAGCCCG 161418 29 100.0 32 ............................. TTGCTCCACGACCGGCCCGGAAATATCCGACG 161357 29 100.0 32 ............................. ACCAGAGACGGATTAGCCTGACGCTGTGCATC 161296 29 100.0 32 ............................. TCTGCTGGATGATTTCGCGCGCCTAGAAAAAA 161235 29 100.0 32 ............................. CATTTTTTGCCCCACGCTTGTTGTCTCCAGTG 161174 29 100.0 32 ............................. TTGTCAACTACGCGTTGTATTATCTTGCGCTT 161113 29 100.0 32 ............................. ATCCGACGGCGATCAATCCGAGCAATCAGCAT 161052 29 100.0 32 ............................. ATCCGACGGCGATCAATCCGAGCAATCAGCAT 160991 29 100.0 32 ............................. CAGCATCCGGCTGACGTGGGCCTGGCATTGCG 160930 29 100.0 32 ............................. CTTTTTCTGCACCTGGATTTTCCACTCTTTCT 160869 29 100.0 32 ............................. GGTGGGCCGCCAACTGGCGACGTACACATTCG 160808 29 100.0 32 ............................. GGCACCTGCTGCCATGAGGTCATAGAAGCGGT 160747 29 100.0 32 ............................. CCTGGTGCATGCTGCAACCCCGGGTGCGATCA 160686 29 96.6 32 ............................G AATTGCACTGACTGTAAGTTCAGCGGTGTAGG 160625 29 96.6 32 .........A................... TACGCGGGCGATAAGGCCGATATTCCAACCGA 160564 29 100.0 32 ............................. ACGTGATGAATGGGAATTTTTTGTGGTCTCAT 160503 29 96.6 32 .................T........... ATTCATCGTGGGAAAAGACCACGGCCATATCG 160442 29 100.0 32 ............................. CTGGTACAGCGCTAGTCATTGATAGAGGTGCC 160381 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 62 29 99.7 32 CTCTTCTCCGCGCATGCGGAGGTAATTCC # Left flank : GTCGTCGCGTCAGAACGGAGATTCACGGAAATCAAGTTCTCAAAGAGATGTTGTCTACGCTCATGCATATTCTGGAGCCGCACTTACCCGCACGCGATGATGACCGGCTAGTAGCAGGGCGCGGTGACGAGGTTTTGGGGCATACTCAATATGGGAAAGATAAATAAATGTTTTTAGTATTGACTTCTACTTATCTTCCTGACCATCTGCGCGGGTATTTGAGCAGATTCCTGATAGAGGTGGATCCCGGTGTTTATGTCGGCAATATCTCTCGCAGGGTGCGCGACAATATTTGGAAGCGCTGTGCCGAAGCAATCGATCGCGGCAGCTTAACCATGATCAACAGCGATTCCAGTAGAGAGCAAGGATTCGCTGTTAACACTCTTGGTCCGCAGCGCAAAAATATAATAGACTTAGATGGCATGTTGTTACCCGCGACCTTATCGGCTGTAGCGTCACAAAACGACGCCAACCGCTAAAGTTTCCGCAGGTAACGCAGT # Right flank : ACTCACCTGGGCTACTCGAAATGTTGGACACTTAGACTTCAATGATCCTCACTTTGTCGTGAACTACGTAAAACAAGACGCGCTATTGCCACGGCCCCCGCGACTGGAATTTCACGCGCAAGGCAAAAACGTAGAAGACCCTGATTATTGGTTTATGCCCAATGATTCAACTTACGCTGATTTACGCTGGACGGAACACGCTAAGTTGCTGAAAGAACTTGGATTTATTGAACAGCCGCTGGCTAAACCGATCAAGGGCGAAATTTCATACAGTGGCCGCCGTGGCTGGAAAGTGACACAAGAGCTAGCTTGGGCCTTGCAAAACCTTAGCGTCAACTAGGCTTTTCACGCATCACCCTGCGAAGATTGATCAGATCGGTTAATGATGCGGTATAGCATCGCTCTAGATAGGCCAGTTCGTCGGTGCAGTTCCATTTTGGAAACCCCGGCATTAACGGCGGCATCAATCGATTGGTAATAATCATCGCGCGCGCTAGCTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCATGCGGAGGTAATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 130034-129396 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBME01000003.1 Corynebacterium propinquum strain HSID18036 NODE_3_length_172501_cov_180.051307, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 130033 28 100.0 33 ............................ CCATTAGCCATCTCCGCGAGGTGCTTAGCTTGC 129972 28 100.0 33 ............................ CGTTGAACCCGGCCCGCTTGTGGTGGAATTCCA 129911 28 100.0 33 ............................ CAGGCCCGTGACGCGGCCCGGGGGCATGCTAGT 129850 28 100.0 33 ............................ GAGCGAATCAAAAGGGATACCGAAGCCTAGGCA 129789 28 100.0 33 ............................ CAGATCAGCAATATCTGTGACACCAGCCTGGCC 129728 28 100.0 33 ............................ GATGTTGGATGTGGCTAGGCAGATCGCGCCTGC 129667 28 100.0 33 ............................ GAAGTCCCGGGATTTGTTGAACTCGTATTTGGT 129606 28 100.0 33 ............................ CCTTGGATTGACGAGCCGCTTTGATTGCGTACC 129545 28 100.0 33 ............................ CGCCCGTGAACGTTTCCCAGTTCGATTTTATTT 129484 28 100.0 33 ............................ CCCGGGAGGTTGACTGAATGCCAAACGCCGACG 129423 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 GTTTTCCCCGCGCATGCGGGGATGAGCC # Left flank : TATCGAATACGGCGGCAGCTGTGCAGGCACTGTCGACAAGATGTTGTGGAAGATTGAGGTAGCCAGATTCGTCGCCAGATTTTGCCCACAATGATTTCGCTTGGTGGCTTTTGTTCGTCACCCACGATTCCATGTTGTTTGCAAAATCAATTGTAGATTTTGGCAAAAATGATGTGGTGTCCATTTGGCTCTTTCGTTAATGCTAATTACGTGCTCTACTTTTCAGTAGTAGCAAGTTCTGGAAATTGCTGCAACTTATATCCCCTTGTAACCTTATCAAGTAAGTTGTGAAAAAACACCGAATCGTATTCTGGGCGTCTGTTGAGCTGCGGCTTTTGGAATATTAAATTGAAGGATAGCCCCGCAGTGGCGGGGGTGAGCCTTTACTTGATAATGGTTCTAATTTTTCCCTGCGCTGGCGGGGCTTTATATCAGTAATCGTGCGTGATAAGTTATATCTAATTGGCTCGAATGCTCTGTGTTGATCCAGGTCAGCGAGT # Right flank : CCGGGCGCTTCGTAAACCGGTTTTTATCGCGCCCCATACAGCCGGTAGCAGTGATGGCGACATTGACGAAAGGCCACAGGTACAGGTGTGGCGAGACAATCGAAAGGAAGAAAAATAATTATGGAATCTAGTGAATTTCGCGTACTCCGCATTGCGCTGGGGCTATCGGCCCAGGATGTGGCTAATGCGTGTTATGTGAATGTGAGGACTGCGCAGCGGTGGGAGACAGTGAATAAGCCCCCGGCTGATGCTGCTGAGTGGATTTCGGGCAAGTGGGAAAAAATGGTTGAGCGCGCGGATGATCTTATCGCCGAGGTGGAGCGCAGTGGTCTGCTGCCTTATTTTTATGATAATGCGCGGTGCCGTGAGCGTACGGGCATGAGGGCGTTTGAATACCAGACGTTGCTTGGCCATGTGAAGATGGAGCTTACACGGCGGGGTGTGGTTTTTGAGTTCGTCGAGGCGTGAATTTAATTCTTCTCCCCAATTTGCAATGCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : GTTTTCCCCGCGCATGCGGGGATGAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAATGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //