Array 1 10-2783 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNO01000066.1 Cronobacter dublinensis strain cro965C1 contig66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 ............................. AGAATAACAACAATCCGTTAAGTGAAGAAGAA 71 29 100.0 32 ............................. CTATCTTATGTGTTTATACAGTGATGGTTTCT 132 29 100.0 32 ............................. CATCCCCCTGAATGTGAGCATCGGAATCGAGC 193 29 100.0 32 ............................. AGCCTACTGCAGAGAAAATGCAAGCCGCAGCT 254 29 100.0 32 ............................. CTTGGCATCCCATCATTCCTTATTATCATACT 315 29 100.0 32 ............................. TACCGTCATCGCCGACTGGCTGCTCATTGAAG 376 29 100.0 32 ............................. TTTTCGATGTTACTTGCAGTGCTGGAATGGGG 437 29 100.0 32 ............................. CTGCCGAGGTAACTTAATAGTCACTAACGGCA 498 29 100.0 32 ............................. CACGTCTTCACGGCAGCGCTTAAAGGGCAACG 559 29 100.0 32 ............................. CAGGAGCATCCAAACCTTTCGCTGATTCTTGC 620 29 100.0 32 ............................. AAAATGCCGACGGCAGTAACAATCACTATCAG 681 29 100.0 32 ............................. GGTTGAACGGCTTGAGGCTGATAACGAGCCAC 742 29 100.0 32 ............................. AAGTTGGTTTGATGCCGTCTAATACCGGTTTG 803 29 100.0 32 ............................. TGCGTAGGGTTCAAATTGGGGGGGATAACTGA 864 29 100.0 32 ............................. TCACGCAACTTTGGTTTCCCAGGCCTCGTGTC 925 29 100.0 32 ............................. TTACTCTATGAACGGCGGCGAACAAGGACGAA 986 29 100.0 32 ............................. CCAGACATGGCGCGGCCTGGGCTGTTGATATC 1047 29 100.0 32 ............................. TGGTATCCGCACATCGTCGAATCCATGAACAC 1108 29 100.0 32 ............................. ATTCGCATTATCACGTCATCACCCGTTTCGCT 1169 29 100.0 32 ............................. CCTGAACCCGTCCGAAAAACGGCAAAACGGGT 1230 29 100.0 32 ............................. ATTCTGGCTTTACTGCCAGCGGCCCCGCACGG 1291 29 100.0 32 ............................. TGCCGGTTTTAAGGACAGCCAGGCCGCCGACA 1352 29 100.0 32 ............................. CCTAACCGCTGCAACCACCGCCGAACTAAAAG 1413 29 100.0 32 ............................. CCCGCCTCCGGCCCCTCAATTTCGTGGTTCAT 1474 29 100.0 32 ............................. TGACTGATTCTGGTTTTGTCCCTGGCTGGAGG 1535 29 100.0 32 ............................. CGCCTCTAAATTGCAATAGGCGCCCGTCTTGA 1596 29 100.0 32 ............................. GCAACACGGGCCTCGCAACTGGTATCAACATT 1657 29 100.0 32 ............................. TTATATGGACCAGACTCAACAAGTAGAGCAGT 1718 29 100.0 32 ............................. CTTTCGTGCCCAATACGTGCGGGCGAAGGAGG 1779 29 100.0 32 ............................. AATAGTAAGACGTTACTATATAAGGCGGGTGT 1840 29 100.0 32 ............................. CGTCAGCGTGAGCTTGAGCAAAGGATGGAAGC 1901 29 100.0 32 ............................. ATTCTCAATGGAGCGGTAGTCTGCGCGTATAT 1962 29 100.0 32 ............................. ATGTTAGCGCGAGTTAGTGGTGGTAATTCTGG 2023 29 100.0 32 ............................. GACTATCACAACTGCCACCGCCAACGACTACA 2084 29 100.0 32 ............................. ACGATGAGGATGCTGTCAGAACCGTGATGTTC 2145 29 96.6 32 ....................A........ CTGGATAGCGAACTCCGCGTGGGCGCAATGGT 2206 29 100.0 32 ............................. GGCGCAGCCCGGACGTTGAGCCTTTCTATGAG 2267 29 100.0 32 ............................. GCACCGGCCTGGGCAATCACCCGGAGCTGGTG 2328 29 100.0 32 ............................. TAAAATAAAAATCCCTACCACGCGTTTACCCC 2389 29 100.0 32 ............................. CGCGATCAGGGTTACGAGTCGCAAATCATCAA 2450 29 100.0 32 ............................. TACGCGGCGGCTGATGCCCTCGGCCTCAGCCA 2511 29 100.0 32 ............................. AAAAACTCCGTCATAACATCACGCTTCTTGGA 2572 29 100.0 32 ............................. ACGTTGCGTAAGGCGCTGGGCCTGCCGGAAAA 2633 29 100.0 32 ............................. TTGTCGTCCGTGTATTGCTCCACGGCTGCAAA 2694 29 100.0 32 ............................. CATTACCCTGTCATTATTATGGACAGTATCGA 2755 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTAAAAGGGG # Right flank : TTACTCATTCGCCGTGGCGCAAAAACTTACCTCTGCCAACCCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGGCAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAATATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5646-9031 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNO01000091.1 Cronobacter dublinensis strain cro965C1 contig91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5646 29 100.0 32 ............................. CGCTGGTATCAGTAGTTTTATTACCCTTACTC 5707 29 100.0 32 ............................. CCGCTCTGGACTTTGGCGACAAATGGCAAGAA 5768 29 100.0 32 ............................. CACTATCGCAGGTTACCACTCTGGCACGTAAA 5829 29 100.0 32 ............................. CCCTGACGCCCTTCCTCAATGGCTTCCAGTAT 5890 29 100.0 32 ............................. GCGCTCAATACGCTCACAGTTACCACCTGTCC 5951 29 100.0 32 ............................. ATCTCGCAGAAAGGGTAAAAAAAATGGCTGAA 6012 29 100.0 32 ............................. GCGTCCCTCGGTTGTAGGAATTGGTGCGGGCA 6073 29 100.0 32 ............................. GATTTGAGGACACCAGAGACCAAATCGACCGG 6134 29 100.0 32 ............................. GTGACCTCGTTGGAATCAGATAGCTTAGCTAT 6195 29 100.0 32 ............................. GAAAACGGGAATGAGTGCAGGGTACTCTACAC 6256 29 100.0 32 ............................. CAGGATTGTGGCGAGAAGAAACCAGTCAGTGA 6317 29 100.0 32 ............................. GTGAGAGTTTAGGCATCAGTCGTCATCATCAG 6378 29 100.0 32 ............................. GCCACAACTGCGCCATCGATTACTGCGCTGAA 6439 29 100.0 32 ............................. CGAGCCTGAAATATTTGGAGTGATTTGTTTGT 6500 29 100.0 32 ............................. CGTTTAATCTGTGTTTTTTTGTTAATTCTTGG 6561 29 100.0 32 ............................. GCGGATCTAAATAAAATAACGTATCTGGCCTG 6622 29 100.0 32 ............................. GGCACTGGCTGAACGTGTCGGAATGTCGGCCG 6683 29 100.0 32 ............................. TCGACGCAGGTCGCCCGCGCGCTGCGCCAGCG 6744 29 100.0 32 ............................. TTTCGTTCAAACAAATCGGTGTCGCGCTGGCC 6805 29 100.0 32 ............................. GCCTTCATATCCAGACTGTCAACGTTGATTCC 6866 29 100.0 32 ............................. GTGTAACCGGCGCGGCGCGGAACTCTTCCGCG 6927 29 100.0 32 ............................. CAAACTCTGCTGCTAACTATCTGGCTAAAGCG 6988 29 100.0 32 ............................. CGAGCGCCCTGAAGCCACCAAAGCAAAAGCAT 7049 29 100.0 32 ............................. GTTAATCAGGGTTTTGTACTTATCCATGCCCG 7110 29 96.6 32 ........T.................... AATGCTTCCAAAATCGCTGGTGGAGTGAGTAA 7171 29 100.0 32 ............................. TGCACATAGAATGTTCACGAAAAACGTTTACA 7232 29 100.0 32 ............................. CGATGCGCCAGAATTTACACATCGTCAACGCT 7293 29 100.0 32 ............................. ACACGATCACTACAGCTAACGCGATTGCGGAA 7354 29 100.0 32 ............................. ACCCACCTGTTTTTTCTCGACGGCGCTCAGTA 7415 29 100.0 32 ............................. ACTGGGAGCGCGCGGCACAGGCGCAGCAGGGG 7476 29 100.0 32 ............................. CACGTCTATTTTTGAACGCAAAAAGCCTCTTG 7537 29 100.0 32 ............................. CACGAACGGCTTGCGACGGTCGCTCGCGAAGC 7598 29 100.0 32 ............................. TTCATTGCCACCGGCAGCTACATTGAAAACAA 7659 29 100.0 32 ............................. CGCGACTACTCGCAGTTTATCGCGTACCCCGA 7720 29 100.0 32 ............................. TGATCGCGGCCCTTCGTGAGCGTGGAGCAAAA 7781 29 100.0 32 ............................. TCACCCCGCATTATTGCCAAACCTGGTTATTG 7842 29 100.0 32 ............................. ATTTCCGCGGGCGCAGGGTGACAGTGATTAAT 7903 29 100.0 32 ............................. CCGCAGCCGCGCTGAAACAGGCGCAGAACCTG 7964 29 100.0 33 ............................. TGCGTACAGAAGTGCGTAACAGTGATTTAAAGC 8026 29 100.0 32 ............................. CGTGGAGACTGAGAAATGACAATCAGTTTTGA 8087 29 100.0 32 ............................. AAAAATGTTGTTAAAACTGATTTTGTGCGCGC 8148 29 100.0 32 ............................. GACGTGATCGGTGAGCGGATGAAAATCGCATA 8209 29 100.0 32 ............................. GCCGGGAGCATTGGCGGCGGCCGCATGAGAGA 8270 29 100.0 32 ............................. TGCGGGCTGGGCTGTTGTTCAGCGAGATTTGC 8331 29 100.0 32 ............................. CGTTTCGCTCGCACCTGGTTACAGAATTGTAC 8392 29 100.0 33 ............................. CACACCAGCGCATCAAACTGGCCCTGTGTGAGC 8454 29 100.0 32 ............................. TGGTCGACGCCTGCGCGAACGGCGGCACGCTC 8515 29 100.0 32 ............................. TTCATGGAGAGCGTAGAGCCGGGAAGAATTAT 8576 29 100.0 32 ............................. TCCGGCAATATCGAGCTCTATCGAATAAATCT 8637 29 100.0 32 ............................. CTAATTACCCTCGCTGACGCGCTGGCGGGCTA 8698 29 100.0 32 ............................. GACGCGGGTATTTACATAGAGCAAAACAAGAC 8759 29 100.0 32 ............................. CCCCGTTGCACTTGAGCCGGGGTTTTTCTCAT 8820 29 100.0 32 ............................. GCTGCTCTGCCTGTATTCGTGGTAACTGCACC 8881 29 93.1 32 .......T....T................ TGGCCGCGCTTGGCTCGACTATCGGGGCGGCA 8942 29 96.6 32 .....T....................... TTCGACGGGCTATCTGCCGAAGAGGCGGAGCA 9003 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 56 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAAGTGCTTTCCGCAGGTGGAATTTCACCTCCTGAGCCCCCCGCAGATGCCCAACCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGTTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACAGCTCTTTAAGAATATGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGGTGTGAAAAATTTCCTTATAGAACAGTCATATAGTTTTAGA # Right flank : GGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGAGAGTTATCGAAAAGCACAACCAGCTTTTAAACTATACAGGCATTACTGAGATGAATAAAAAAAACTTTTTACTGGCTATTCCAGCGTTATATTGTTTTTGCGTGTTTGCCGGGGATGACACTCCCGGGCAACAGCCGCAACAGGCCGCGCTCAAATTCAACCAGTGGTATATAAAACACTTCAACGATTCGGATGATAATCTGCTTAACAGTAAAGAAATCGAAATCTACGTGGCGAAAGAGACGCTGGAAACGTTACGTCACGCGAGAAATAACGATGATGAATTTTATGATGCCGACTTTTTTATAAAGGCGCAGGACATTATGCCTGACTGGCCAACACATACGGTTGTAACCGGCGCAGAATACGATCCCGTTTGTACTCAGGTGTACGTCTCATTCGGCCAGCATCAGACGCATGACGTGGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82047-82624 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNO01000014.1 Cronobacter dublinensis strain cro965C1 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82047 29 100.0 32 ............................. CCATCCTGGATATGTGGAACGATATTGCTGTA 82108 29 100.0 32 ............................. CGCGGACTGTATACCAAAACTATCAAATAACG 82169 29 100.0 32 ............................. AGTGTGGATTTGTTCATTTTGCTTTCCTTTTC 82230 29 100.0 32 ............................. GGCTTATTTGTAAACGCTTTTATTATGCGCAA 82291 29 100.0 32 ............................. GTTCGCTATTCGGGCTGTCAGGCGGTCAATAA 82352 29 100.0 32 ............................. GGGCTGACGGCTATGCGCTGGGTGCGCGGCGG 82413 29 100.0 32 ............................. GAGCGAAATAAAATGCCTGTACAGACTAATTA 82474 29 100.0 32 ............................. TTGATTCACTGGTAGTAGTGCGCACCTCAGCA 82535 29 100.0 32 ............................. TCACAGCTTCTGATGTTCAAGGATTTACTCAA 82596 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGATGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGCCCGAAGACGAGGTGGTCGCCGATGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTCACCGAAAGCGAACAATCTGGTAGATGTTACCAGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGTGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : TTTAGCTTAAGTTTTACACAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //