Array 1 95705-98072 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRO01000010.1 Vibrio cholerae HC-1A2 vcoHC1A2.contig.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 95705 28 100.0 32 ............................ ATCGTCGTTTATTACGTAGGTCGTTGGCAAGA 95765 28 100.0 32 ............................ AACAAATACAGTCTCAATCTAACATTCTTCGG 95825 28 100.0 33 ............................ ACGAAAAGGTAAAGTTGCTAGCGGACAATGTTC 95886 28 100.0 32 ............................ TGTAAGCCCCATCGATAACATCGATGTGTTCC 95946 28 100.0 32 ............................ ATTACGACCGTTGGCCAGATGACATTGATGGT 96006 28 100.0 32 ............................ ACAGCAAGCCACGCTAGCCGGGGTGAGTGAAG 96066 28 100.0 32 ............................ ACCATGATTATGGCAAGGACAGCTACTATTCC 96126 28 100.0 32 ............................ AAGCAGCTTTAGCACTCGCAGAAGTTCGCTTG 96186 28 100.0 32 ............................ TTAAGCAACACACCTATAATTAAAAAATAGTT 96246 28 100.0 32 ............................ GGCAGATTCGAGCGCACCCCAGAAAAACTTAT 96306 28 100.0 32 ............................ CTTACGAGCACCACCATGAGAATGATTAGTGT 96366 28 100.0 31 ............................ TTAAATGCAAATGCCCGTTACTTACTGCGGT 96425 28 100.0 32 ............................ GCTTTGATAGCAACCGTTATGTCCATGCCCTT 96485 28 100.0 32 ............................ CTATAGATAACGGGTAAAACGCTTGGAAAAAC 96545 28 100.0 32 ............................ GCTTTCAGTCTCGCCACTCTCTCAGCTACCCA 96605 28 100.0 32 ............................ CATAAGCTTCAAAGCTTCGGTTTGATTCTTAC 96665 28 100.0 32 ............................ AGAGGAGGCGTTTGCCGAGCTGGGCGTAAATG 96725 28 100.0 32 ............................ ATATAGATCCGGTTGTGTTTGTTGCCTAGTGA 96785 28 100.0 32 ............................ AACAACGCAAACCATCACAACAGAGCAGGTAT 96845 28 100.0 32 ............................ CCTACCTTCTTGTATTCTGGAATTAAGTCATG 96905 28 100.0 32 ............................ ACTTGAAGAGGAGCTTATTGAGAAGCGCCATT 96965 28 100.0 32 ............................ AAATATACAAAGTCGTTCCTGTTTTGTTCTGT 97025 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 97085 28 100.0 32 ............................ GTTATATCGTTTGATGTTTGTCTCGACAGCTT 97145 28 100.0 32 ............................ AAAGCGATCAGAGTTTATGATGTGAACTTTTT 97205 28 100.0 32 ............................ TCGCTGAGCGATCACAAGAAACCAAAAACGAA 97265 28 96.4 32 ...........T................ TTAAGCGGATCCGTGGTAGTGGACTACCAAGC 97325 28 96.4 32 ...........T................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 97385 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 97445 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 97505 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 97565 28 100.0 32 ............................ TGAGAGGGAATCAAGTTGTCTAGAGAATTAGA 97625 28 100.0 32 ............................ AAGAAGCGCGGTAGCCTGTAGCATTCATCATT 97685 28 96.4 32 ...........T................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 97745 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 97805 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 97865 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 97925 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 97985 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 98045 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 40 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //