Array 1 108267-107384 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRKZ01000145.1 Escherichia coli strain 603030 ctg7180000011128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108266 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 108205 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 108144 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 108083 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 108022 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 107961 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 107900 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 107839 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 107778 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 107717 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 107656 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 107595 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 107534 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 107473 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 107412 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 135095-133968 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRKZ01000145.1 Escherichia coli strain 603030 ctg7180000011128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 135094 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 135033 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 134972 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 134911 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 134850 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 134789 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 134728 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 134667 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 134606 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 134545 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 134484 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 134423 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 134362 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 134301 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 134240 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 134179 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 134118 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 134057 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 133996 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //