Array 1 73929-73351 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFG01000021.1 Actinomadura harenae strain NEAU-Ht49 Scaffold21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73928 29 100.0 32 ............................. ACGGAGCGGGTCGGCGCCCGGGTCGCCGCCGT 73867 29 100.0 32 ............................. GCCCGGCATCGACTCGCGTTCTGCGTTCAGGC 73806 29 100.0 32 ............................. TGCTTGTTGAACGAGCTGGTCATCTTCACCCC 73745 29 100.0 32 ............................. CAGTCTGGTCACCACCGCCTTCCTTGTCGGCG 73684 29 100.0 32 ............................. TTCCATCAGCAACAACGTCGCGGACCGCGTCT 73623 29 100.0 32 ............................. GTCATGGCGGCCCCGTAGACACCCGCGGCCCA 73562 29 100.0 32 ............................. CGCCTCGACGTCCAGCCGGTCCGCCTCACCCG 73501 29 100.0 32 ............................. CTCGACGGCCGGCACGTCGGGATCACCGCGTC 73440 29 100.0 32 ............................. CGCTGTTCCTCACCCTGGCCACCGCCTGGTGC 73379 29 79.3 0 .C....C..........A....C..TC.. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTTCTCTCCGCGCGAGCGGAGGTGGGTCG # Left flank : CTTCCGCCTCCTGCCCCGACTCGTCGCCGACGTCCAGTCCCTGCTCGTCCCCGACGACGGCACCCGGCAAGAGGACGCCCAGGAGGCCTCCGAGGAACTGGTCGACCTCTGGGACCCTGACCTCGGACGGCTGGCCGGCGGAACCAACTACGGGCACGACTGACATGGCCACCATGACGGTCATCGCCACCACCGCGGTCCCCGACCACCTGCGAGGCGCCCTCACCCGCTGGATGATCGAACCCATGCCCGGCCTCTACGCCGGAACCCTCTCCGCCCGCGTCCGCGAGGAACTCTGGTCAGCCGTCACCGCCACCATCGGCGACGGCGCTGCCGTCCTCCTCCACCCCGACGACAACGAACAGGGATTCACCCTCCACACCGCAGGCGAACGCCGCCGAGTCCCCATCGACCTCGACGGCCTCACCCTCATCGCCCTCAACCCCACCGAGACAGATAACGAAACAGTAAACCCTTGACATCGCCGCAGGTCGCGAAGT # Right flank : AGCCGGTCCGGTTAGGCGTGGAATCGTCCCCGCCCTATGCCAGCCTCGCCGGCCTGGAGCGCTCCGAGGAGCTGGCTATAGGCAACCCATGAATCGGCCCGCTTTCGCAAGGCGTGGCAGTGGGGGCCGGTGGGCACAGGCTGCGGGTGATCACGGGATCTTGCGGCGCACCCTGTGGGGACTTGACCTGGGAGAATCGGATTCAGGCGGACGGTTCCTCACCACAAGCACTCTTCTGCAGGCACGGGTTGTGGTTGGTGGGTTCGTCCGGTGTGCTGCTGGTGGTGCGCTGCGTGATCTTTGTGGGAGGCGGGGGCGTTCGCTGAGCTGGGAGGATGGGGGCATGGCTGAGCGTGGGGCTGAGGGTTGTCCTTGTGGGTTGGGTGCTGCGTATCGGGATTGTTGCGGGCGGTTTCATCGGGGGGAGGCTGCGGCGGGGACGGCCGAGTTGTTGATGCGGTCGCGGTACTCGGCCTTTGTGAAGCTGGATGCCGGGTATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCGAGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82892-83225 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFG01000021.1 Actinomadura harenae strain NEAU-Ht49 Scaffold21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82892 29 100.0 32 ............................. CCCGCGTGGTGCGGCACATGCGACGAGACGAC 82953 29 100.0 32 ............................. CTGCGCTCGTAACCCTCAAGGGCTTCGTGCAC 83014 29 96.6 32 .....................C....... CAAGGACGAACCAGCTCATGCAGGTGGTCAGC 83075 29 100.0 32 ............................. AGCGTGCTGGCCACCGACATCGCCCGGCACGC 83136 29 100.0 32 ............................. TCCTTGAACGTCGCGTGCGTCTCGCGGTGGAG 83197 29 96.6 0 ..........................C.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTTCTCTCCGCGCGAGCGGAGGTGGTTCG # Left flank : CCCCTTCACGGGCTGATCACGCGCGAACTCCGGAGACTCGCTGATCAACCCCTCGTAGAGATCGTCCACGAGCACCTGAAACGACGGAGAGACCTTCCCGACGTCATGCAGACCAGCCCAGAAACCGACCAGCCGCCTCGCCTCACCACGAGAAACACCAAGCTCGTCGGACCGCAACGCGGGCGTCCCCGCCAGCCAGGCGTCCCACAACGCACCAGCGATCGCCGCCGTGTCGAGGAGATGACACGCGACCGGATACGCCCCCGGAAGCCCCGCCCGCTTACCCCAGAGACGACCATCAACACCCACCACTCGCACGGGATCCCGCTCTGGCATGAGCCCCTCCGAGCCTCTCACAACTGGGAGCGACCACCCCATCACACACCACCGACATTTCCGCGCCAGCGACCCGTAAGCTGCCCAAGTGATCCACCACGAACGAACCAGCCAGAGCAAGTCACAAAACAATAACGGCACCTAATCGACGCAGGTCGCGAAGT # Right flank : GCAACAGTCCCGGCTCGCAACAGGCAGCCCGCAAGGGGAGGACTCAGGCTGGCGCTTGGGCCTGTCCTCGTTCTCGCCGCCCCCGGGCAACGCAGGTCAGTGGGTGGGGCTGGTCGTTCCGTAGAGGTCGCGTAGGACGCCGATTTCGGCGGTGCCGGGGAAATCGACGTCGTTGATGGTGATGTTTCGGTTGTTGAAGAGGCTTTCGCTGTAGTCGATGAGGGTCAGTGCGGTGTGTCCTATTCGCCAGGCGATGGTGGTGAACGGGACGGGGTCGGGGGCGGGGCCGCCAGCGCCCTCGGCGTCGATGCGCCACCGCCCGGACGCGTCAGGACGCACCGTCCAGCCGTCCGGGACGGGCTCCCAGAGGTACTCCGCGTCGGTGAGACCAGCGAGCCGGTCCGCTGTGCGCGTCCAGACGGAGCCGAACAGGGCGATGAGCGATTCCGCAGCGGAGGTCATGCCACATCGTGCCCCGGGGCCTGAGCCGGTGCCTATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCGAGCGGAGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15529-15983 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFG01000004.1 Actinomadura harenae strain NEAU-Ht49 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15529 29 96.6 32 ............................G GATTTGAACTGCTGCAGCAGCTCGACCTCGGC 15590 29 100.0 32 ............................. AGCACCGGGCTGTACTCGAACAGATCGACCTC 15651 29 100.0 32 ............................. GGCACGGCGAGAATGCGCCGCCATGTCGCCGG 15712 29 100.0 32 ............................. CATGGCTACAAGTTTGCTTCGGCGAACCAGAC 15773 29 89.7 32 ....AT......................G ATACAAGCCTCACTCGGGCGAGCGGACGCCGC 15834 29 100.0 32 ............................. ACCCAGGTGCTCCGTGCATCCTGCGTCACGGT 15895 29 96.6 32 ..............T.............. TCGGTGGAGGGCTGGTCGGGTTTCGTCCCGTC 15956 28 86.2 0 ..................A..G...-..T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : TACATCCTCAACACCTCGATGCCAGTAGTGGTGGCAGACGGCCGCGTCTACTCCCTGAGCAGCGACCACAACGGCCAAATCGCCGACCGCCTGACCATCAACGACACCCACACCGGCGCCCCACTGGCCCGCATCCCGCTCACCCTGCCCAGTACCGACGCCCTCTTCCAACTGGACGGAGCAGGCCACGGCCTGGTGAGCCTCCACAACTCCAGGCCCCCCGCAGAGCCCGACGCCACCGACACCGTCTTCCTCGGCGACGAATAACAGCCACGATGCCTCGGCCCCTCGCCCGCCCCACGCCTCAGGAGCGTCGGTGTATGTCGGTGATTCTTCCAGTGCTGCCGCCGGGCGTTTCCGCACCTCAGAACACGTGCAATGCCATGCCGACCTTCCAAACGGCCCACCGAAACCACGCTCAAACGCGGGCCGAATTGCGCCTCCAGCAAGAAGTGCTCGAAAATACCCGAGCGACCGCACAACCCCCCAGGTCGCGAAGA # Right flank : TCAGTACGTCGCCGACAGCGGCGGACGGGGTGACGTGCTCCCGGCATCGACGACCTGCTTGAGGTGGGCGGTCGAGACTGTGCCCGAGTCCTCAGCGCTCATGTTTGTCCGCCCGATTCTGTCGACGTTGAAGGACTCAGCCTCCGTTCCTGGCTCTTGTCGGCGGACGCCGTTCTCTGACGCGCGTCCTGCACCGCGCCCACGGCGGTGACCAGCTCCGCCATCTCGGCCGACCCTCTTGCGACGAACCTGGCCTGCAGCAGGTGCCGGACCTCACCTACGGTGCCGACCTGACGTAGGGCCGGACGCCGCGTCTCGTACTCCAGGGATGCGGCGTGCCGTTCACCCGCCTTGGTCACGACCCGGCGAGCGCCTTCCGACAGGCGCAGGCACGCCACCGGACACGTATCTGTGATCGTGTGCCCCCGCAGGTGGAGGGCCTCCACGTCCAGCGCAAGCCCGTCCACCGCCGCCACCAGGCGCTTCGCATCCCGCGACGA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //