Array 1 27241-25756 **** Predicted by CRISPRDetect 2.4 *** >NZ_NURO01000131.1 Bacillus toyonensis strain AFS051123 AFS051123_97_G5_Contig43_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================ ================== 27240 32 100.0 34 ................................ TTATAACTCCCATCCATAAACGAACGAAACGGTA 27174 32 100.0 33 ................................ TGGTCAACTTCAAGAACATATTAAAGAGTTAAA 27109 32 100.0 34 ................................ AACATATCGAGCCGATGCTAAAAACTGTGTATTG 27043 32 100.0 33 ................................ CTAATGTGTTAAAAATACTGAAATGTGTATAAA 26978 32 100.0 35 ................................ ATCATGTCGTACACACGAGATAGCATCTGCAAAGC 26911 32 100.0 35 ................................ ATCTACAATGACAAAGTACCTCGTTGGATCGCCAG 26844 32 100.0 33 ................................ AAATCAGAAAAATGCAAAGAAATAATCTGATCT 26779 32 100.0 34 ................................ AGAATAAAGTTGATGATCGGCACAGAAATACCCG 26713 32 100.0 33 ................................ GTAGCTGAAGAGAATGATATTTTTGAAGGAAAC 26648 32 96.9 34 ..............N................. ACTCTTTCAAACGAGTCTATTAATTCAGTTATTG NGTGGA [26629] 26576 32 100.0 34 ................................ ATTTCACCTGTCGGTACACCTAAATCAATTCTCG 26510 32 96.9 34 .......T........................ TTTAAATGTTTGCCACACCTTTTTCAATTTAGCA 26444 32 100.0 33 ................................ TACTCTACCCAATCGCAATTATAGGTATGAACA 26379 32 100.0 35 ................................ AAACCTGAAACTTTTTATGAATTAGAAGGAACATG 26312 32 93.8 96 .........C..A................... CTAAAAATGATTGTAAGTGTAATTTTTGCCGTAAGTCGCACCTCTTGTATGTGGATTGAAATATGAACGACTATGGTTATTTTTCGAAACAAGTAT 26184 31 93.8 34 .....-...C...................... ACTATGCCTTTACCCGTAATTATGGACAAAATCC 26119 32 90.6 33 .........C....G......C.......... TTCGTATTGTTCGCTGTCTTGACTGTCTCTAAA 26054 32 84.4 33 ..T......C..A.T.....A........... CATAATGGTAAAGTTTTAGGTTATAACCGTTTT 25989 32 84.4 34 .........A.AAG.............T.... ATATCTTTAGCAACTCCTTACCAAAGCTTAAAAA 25923 32 84.4 35 .........C..A.T....T.......T.... CTTTCAATTTCGCAATTGTATTGTTTTGCGATCTG 25856 32 81.2 34 ...A.....C.........T.GCA........ ATAGTAATAGCTATAAGTTGCTGATATACTATCC TTG [25827] 25787 32 78.1 0 .GGA.....C........C.A..........C | ========== ====== ====== ====== ================================ ================================================================================================ ================== 22 32 94.8 37 GTCGCACCTTTTGTAGGTGCGTGGATTGAAAT # Left flank : GTGCGTGGATTGAAATTACTTAACTACTGATGGATACGTTCGCGGCGGT # Right flank : CATTTTGAGCTACCTACTGCTTAATATATAACATTTCATATTTCGACTCTTATCCTTCTCCTGCTCATCTTTCGAATTTTCTCGACGTTTATTCAAATAAAAATAAAAAAGCTGAATCCCTTCTCACAGAAGAAGTTTCAGCTTTTAGTTTTTTAATCATACCCTTTGCAACAAGGTGCAATTATATTTCAGTGTATCCGCACCTTGTAGCTATTATTATGTATGCTATATTCCACAAAATAATTACAAAAACTCTATTATTCTCTCCATCTATTTTTATTGTATGCACCAACGGGAAGACATATGCACCATCCTCGGTGAATGTGTATAAATTACATTGAAAGTGTCAAAAATAACAGTTAAATAGGATTAAAGAAAGGAAGGCACTTTCATGAAAGGAAAAAAGAAAAATCGTACAAAGCTTGGAAAATGGTTAGATCAAAATGGAATAGAACAACAGGAATTAGAAAATGCAACTGGTGTTAGTCGTAATACAATTT # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTTTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [37-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 152-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NURO01000093.1 Bacillus toyonensis strain AFS051123 AFS051123_97_G5_Contig51_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 151 32 100.0 34 ................................ TATATCTGTTCCTTTTAAAACAATGTCCGTATAA 85 32 100.0 34 ................................ ACAATAGCGTAACTCAATGCGTAACCGACTACCC 19 19 59.4 0 ...................------------- | ========== ====== ====== ====== ================================ ================================== ================== 3 32 86.5 34 GTCGCACCTTTTGTAGGTGCGTGGATTGAAAT # Left flank : TAGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGCACCGTTAGCGGTGCTGGACAAAAAAGGCTGCGGAAAGTTTCAAAAACGTGTCAAAATTATGGTCAACGAGTACAAAATTCAGTGTTTGAATGTGTTGTAGATGCAACTCAATTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGATAAAGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAAGTCACGCATATTGGTGTAAAAGAATCAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAACGTATAGCACACATGGAATCCCTCGTACATTCGCACTTGAATTTTCATAATTTATAATTAAAATTTGTGATTTTCCACACAAATTTATTTATACAATTAAAAAAATTCATATTTTCGAACCGAATTAACGTATTTTTATATGATTTTTAATACAAATCGGT # Right flank : G # Questionable array : NO Score: 7.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.33, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTTTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //