Array 1 90646-91345 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITS01000003.1 Cronobacter sakazakii strain MOD1_Jor100 csakJor100_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90646 29 100.0 32 ............................. CTGGTCAAAGCCGCACAAAAATCCCATGTCGA 90707 29 100.0 32 ............................. CGCAACGCGCTGCACCTGACCAGACAATTTTT 90768 29 100.0 32 ............................. CCTTCGCTATCGATCACGCTCAGATGGGAATC 90829 29 100.0 32 ............................. GTGTTAACTCAAATTCATCGTCCCACGGTGGG 90890 29 100.0 32 ............................. ACCCGCCAGGCTGATGAACTCGCAGACCGGCA 90951 29 100.0 32 ............................. TCGGAATCCTATGGTCAGCCTGTGATGTACAA 91012 29 100.0 32 ............................. CGGAATACAAAATTTTCGTCAGCGTTCGCTGT 91073 29 100.0 32 ............................. CTCACACTGATTCCATTCAACGCAACATAGGA 91134 29 96.6 32 ...........................T. TTTGCCACCACAATAATCATTCCAGTTCTCAT 91195 29 96.6 32 .........A................... TCTTCCAGGAGATCGATCCCTTGTCTCAGAGC 91256 29 93.1 32 AT........................... TACGGCGCTTGCAGCTCTTGCGATCATTATGG 91317 29 86.2 0 .T...................TA.....T | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTTGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAACGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : TACGCCACCTGATTCACGGCGCTAATGTGAAATAGGGATCACGATTTCAGTCATACCTTTATTGAACCCGCTTCGGCGGGTTTTGTCACATCCCGTTCCCTGTTACTCTTTTGGCACATTTATCAAAGGGAATAGGGATATGAAGAAGGTTGTCATGGCTATTATTTTAGGCTCTTTTCTAACTGGCTGCGCGCCTGGCTACGTTTATACGCCACCTTCTAAGGTGGAATATGATAAAACCATGCAAGAAGCAAAGCGCAAGGACGCAGAGTTTGCTGAAAAAGTAAAAAATATAAATTTAGATACTGCGGATGTTGGGGTAAAGCCGAAGGATTACCAATCTTTGGTTGAATCGGCGATTCGTGAAGGTTTGAAAGATCCAGACTCTGCTAAGTTCTACGACTTCACCTCGCCACGCAAAGAAGTAATGGTTGAACAGGGTGACTTTGTTTATGGCTACTCGACATGTGTTTATGTTAACGCCAAGAATTCATATGGTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 326-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITS01000064.1 Cronobacter sakazakii strain MOD1_Jor100 csakJor100_contig_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 325 29 100.0 32 ............................. CATTTTCTTTATCACACAACTTTAATTGCCCT 264 29 100.0 32 ............................. TGCTCTCGTTAGATTTAAACCAGCTGACCAGG 203 29 100.0 32 ............................. CTGACACTGACGATAGTGAGGAGGTAGACGAG 142 29 100.0 32 ............................. TTACCCCCGCATCCATTGAACCGCTTTTAAAA 81 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGATGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GAGCTCAGCGGCGCAATTATCGATTTCCGCGGCGTGTTCCCCGCGCGAGCGGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94290-93652 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITS01000053.1 Cronobacter sakazakii strain MOD1_Jor100 csakJor100_contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94289 29 100.0 32 ............................. ACAAGCCGCAGCGGCGGCGGGGGGTTATTTTG 94228 29 100.0 32 ............................. GGGGCGGTGTTGTTCTTTAGCGCGAAGCGCTG 94167 29 100.0 32 ............................. CTGTCAATGACACTGGCTCCCCGACCTTAACG 94106 29 100.0 32 ............................. AGCAAAATAGATAACGCACAGAACGAAAACCT 94045 29 100.0 32 ............................. CCGAACATGACCTGATGCGCCTGGCTATCGAT 93984 29 100.0 32 ............................. GCTGCGCTTGGCCTGCAATATATCGGTACACA 93923 29 100.0 32 ............................. CCGGCAGCGCCGTAAAAAGGCGCGCTGATTGC 93862 29 100.0 32 ............................. CCAATCATTAAAACATAAGGAACCACCTATGA 93801 29 96.6 32 ........T.................... CGACACGATCCGCCGCCTGGGTTACGAAAGCG 93740 28 96.6 32 ...........-................. ATTCACGGTAACGTCACCGCCAGCACCGTTTT 93680 29 93.1 0 .....................G......A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GCGAGCGGGGATAAACCGCGTCCAGCAGAGACAGCAGAAACGGCAGCAG # Right flank : GTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCATTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATTACATCTGTTCTATTTTTGCTAGTTATATTGAAATTCTTTCTATTGCTAACTTTTATGTTTGTTAATTTAAATTAAATGTTAATTACAGCGTTTATTAAGTTAAACATGTAGAATTTATACTTTCTTCAATTAATAGGAATATATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACATGATCGGGCCTATAGCAATAGCCATCATAAGTGTGAGTTATTTGTCAAAGAAGCTATTATTGCTGGTGGGGTGGATATACATCCAACACCTTCTGCAAAAGATATGGGTAACGCATTGATTCACGCTGGTTTTTATGAAGTTTATGGTGAGCCCGTAGCGGGTGACGTTGCTGTTATTAACGCGATCCCCGGAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //